Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421024
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Entry
139421024 CDS
T10872
Name
(RefSeq) procollagen galactosyltransferase 1-like
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla00310
Lysine degradation
ocla00514
Other types of O-glycan biosynthesis
ocla01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
139421024
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
139421024
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
ocla01003
]
139421024
Enzymes [BR:
ocla01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
139421024
Glycosyltransferases [BR:
ocla01003
]
O-Glycan biosynthesis
O-linked Gal type
139421024
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
CAP59_mtransfer
Motif
Other DBs
NCBI-GeneID:
139421024
NCBI-ProteinID:
XP_071027599
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All DBs
Position
12:complement(64493972..64521940)
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AA seq
609 aa
AA seq
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MHGYNFFLSIALTILFSGPAQGYFPEERWSPESPLLAPRVLIALVCRNSEHSLPYFLGNI
ERLNFPKDRVAIWVATDHNVDNTTAILRDWLVKVQKLYHYVEWRPQEEPTEYQDADSPKQ
WTNLRYAHVMKLRQAALDSARDMWADYFMVADCDNLLTNPNVLWKLIKEKKTIVAPMLES
RAAYSNFWCGMTSQGYYKRTPAYIPMRKQVRKGCFAVPMVHSTFLIDLRKEASRQLAFHP
PHPDYSWAFDDIIVFAFSARMADVQMFLCNRETYGYFPVPLRAHNSLTDEADSFLHSLLE
VNVRNPHVLPSEYIPAPIKIQDKLGFDEVFMINLKKRTDRRDRMLRTLYEQEIACKVIQA
VDGKAMNISEINALGIHMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIAERGLKSSLVI
EDDLRFEVFFKRRLMNLMSEVESQGLDWDLIYIGRKRMQVDRPEKSVPNIHNLVEADYSY
WTLGYMMSLQGAQKLLRAEPLKRILPVDEFLPVMFNKHPVSDYMEQFEVRDLKAFSAEPL
LVFPTHYTGDAGYISDTETSVVWDNEKVRTDWDRARSGKTQEQAEISSEAQNSDVLQSPL
DSTATRDEL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggtacaacttctttctgtccatcgccctgacgatactgttctccggaccagct
caaggatacttccccgaagagcgctggagccccgaatctccacttcttgccccgcgggtc
ctcattgccctcgtctgccgcaactctgaacattctctgccttatttccttggaaatatc
gaacgtctgaattttcccaaggaccgcgtagcaatttgggttgcgacggatcacaatgtg
gacaacactacagccatcctgcgtgactggctcgtcaaggtccaaaaactgtaccactat
gtggagtggaggccgcaggaggagcccacagagtaccaggatgcagacagcccgaagcag
tggaccaacctccgctatgcacacgtgatgaagctacggcaggcagcactggactccgca
agagacatgtgggcagactacttcatggtagcggactgtgataacctattgaccaatcct
aatgtactgtggaagctcatcaaggagaagaagacgatcgtagctcccatgttagagtcc
cgtgcagcttactccaacttctggtgtggcatgacctcccagggttactataagcgcacc
ccggcatacatccctatgagaaagcaggtgcgtaaaggatgctttgcggttcccatggtg
cactccaccttcctgattgacttgaggaaggaggcgtcacgccagctggccttccacccc
cctcacccagactacagctgggcgttcgatgacatcattgtcttcgccttctcggctcgc
atggcagatgtgcagatgttcctatgtaacagagagacttatgggtatttccccgtgcca
ctgcgagcccacaactccctgacagacgaagcagacagcttcctacattccttgttggag
gtcaatgtgcggaaccctcatgtgctgccctcggagtacatcccggcccccataaagata
caagataaactgggctttgatgaggtgttcatgatcaacctaaagaaacggaccgaccgg
cgggatcgcatgctgaggactctgtacgagcaagagattgcctgcaaggtcattcaagcg
gtagacggcaaagcgatgaacatcagtgagatcaatgccctggggatccacatgctacca
ggctacagtgatccgtatcacggcaggcccctcactaagggagagctgggctgcttcctc
tcacactacaacatctggaaagagatcgcagagcgaggtctaaagagttccctggtgatc
gaggacgatctgcgtttcgaggtcttcttcaagcgacgcctgatgaacctgatgagtgaa
gtggagagccagggtctagactgggacctgatttatatcggcaggaagaggatgcaggta
gaccgccctgagaagtctgtgcccaatatacacaacctggtggaggctgactactcctat
tggacgctgggctatatgatgtcattacaaggagcccagaagctgctgagggcagagccg
ttgaagaggatattacccgtagatgagttcctccctgtcatgttcaataagcaccctgtc
tcggactacatggagcagtttgaggtgcgagacctgaaggccttctcggccgagcctctg
ctagtattccccactcactacacaggtgacgcgggctacatcagcgacacagagacctcc
gtggtgtgggacaacgagaaggtccgtacggactgggaccgggcccgctcggggaagacc
caggagcaggcggagatcagcagcgaggcccagaactctgatgtactccagtcacctctg
gacagcacagccacacgggacgaactatga
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