Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421104
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Entry
139421104 CDS
T10872
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139421104
09122 Translation
03013 Nucleocytoplasmic transport
139421104
03015 mRNA surveillance pathway
139421104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139421104
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139421104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
139421104
NCBI-ProteinID:
XP_071027748
LinkDB
All DBs
Position
12:68465245..68482485
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AA seq
770 aa
AA seq
DB search
MADRRRRRRRASQDSEEDDESCSGSESGKSLSPTTKPRVREPEPVEAPAVRVVPKNDAES
ECESEDGVGEAVLSDYESADPEENASHSEGGEEEEEEEEVPPPAAGPKPSPTADTPAAEG
ELQEGGGKVEEGEKGLSKEVKCEDKGNLAGERQSGDGQESTEDSENKGAKPGQKLDDDQD
RNNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSREEL
VAIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWRDGDGERPFHTSWQQGGNPNSRST
PLAVALQQSGPPPSAAPNTQRNNNPPRPSHPPPRGFQGNRPPQAQYRNDRNQESQRPKAE
PLQTRSLPPMDGERGPRGRGNRGAHTERSSSVVVEEIRSEEDDERNTTVTTSQSVYHNRH
YSGKGDRERDSAPRRQEQQRGGSAPPADNPVTRDASPAPERPVEKKSYSLARRTRTRATE
LDKQASLEEPASTVSSSALTSEPWQGPSQSQGDAGDSSQATVLTGLDQDLARLSLAGQNW
AQNPTSFLRAEMRGIPNSMHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSPEPAPPMHI
GVMESHYYEPMSYQGPIYAHGDSPAPLPPQGMLVQPEMHLPHPGHPGHPGLHPHQSSGPM
PNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPMYNPPAQS
QVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEVGYGPE
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacggcgaaggaggcgcgcgtcccaggatagcgaggaggacgatgaa
tcttgttcgggatcggaaagtggaaagtccctttcgccaacgacaaagccccgagtacgg
gaacctgagccagttgaggcaccagctgttcgtgtggtgccgaaaaacgatgctgaatcc
gagtgtgaaagtgaagatggcgtaggagaagctgtcctttctgactatgaaagtgcagat
cctgaggagaatgcctcccattcagagggaggtgaggaggaagaggaggaggaggaggtc
cctccaccggctgctgggcccaaacccagtcctactgccgacacccctgctgcagagggg
gagctgcaggaaggaggggggaaggtagaggagggtgagaaaggtttgagtaaagaagtg
aagtgtgaagataaaggcaacctggcaggggagcggcaaagcggggatggacaggaaagc
acagaagactctgagaataaaggtgctaaaccaggccagaagctggatgatgaccaggat
cgtaataacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcagagga
aacgcacaggaggaggaacggccgaagggtcgtaacaggaagctgtggaaggatgagggt
cgctgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggagctg
gttgcaatctacggctatgacatccgcaacggaggtgtctccaatgagcggtcctataga
cagcgcaagcccagacacagcacctccccagtccgggacaagcgctggcgggatggagac
ggggagaggcccttccatacctcctggcagcagggagggaaccccaacagccgtagcact
cccctagccgtggccctgcaacagtctggtcctcccccctcagcagcccccaacacccag
cgcaacaacaacccccccaggccctcccaccccccaccccggggcttccagggcaaccgt
cccccccaggcccagtacaggaatgacagaaaccaggagtctcaacggcccaaggccgag
cccctccagacccggagcctaccgcccatggacggggaacgaggccccaggggccggggg
aacagaggggcccatacggagcgcagctcttcggtagtggtggaagagatccgcagtgag
gaggatgacgagcgcaacacgacagtgacaacgtctcagtccgtctaccacaatcgccac
tacagtggcaagggagatcgagaaagggactcagcgccacggcgacaggagcagcagcga
gggggatctgctcctccggcagacaacccggttacccgcgatgcctccccggctccggag
cggcccgtggagaagaagtcgtactccctagccaggaggactcgcacccgggccactgag
ctggacaagcaggcctctcttgaggagcctgcctccaccgtgtcttcctcggcactgacg
agtgagccgtggcagggccccagtcagagccagggggatgctggagacagtagccaggcg
acggtactcacagggctggaccaggacctggccagactaagcctggctggacagaactgg
gcccagaacccaacttcgtttctacgcgctgagatgaggggcatcccgaactctatgcac
atgggtggagcacctccacaatacagtaacatagaagagctgggagctggtaaccgggca
aaacggtactcgtcccagcgccagaggccaagcccggagcccgctcctcctatgcacata
ggggtcatggaaagccactactacgagcccatgtcttaccaaggaccaatctatgcccac
ggcgacagccccgcccccctcccaccccagggtatgctggtccagcctgagatgcacctc
ccccacccaggccatccaggacacccaggtctacacccccaccagtcgagtggccccatg
cccaacccagctctctacgctgctccccccgtctccatgtcccctgggcagccccctcca
cagcagctgctggccccgcccttctaccctccgccaggtgtcatgacctttgggaacacc
aactacccctacccggcaggagccaccctgccccccatgtacaacccgccggcccagtcg
caggtgtacggccagtcgcaggtgtacggtggggtgacgtactacgatccaatgcagcag
caagcccagcccaaaccctcgcctccccggcgctcctcccagcccgtcactgtcaaacct
cccccaccagaggtagggtacggcccggagtga
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