Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421171
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Entry
139421171 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DHX58-like isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139421171
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139421171
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139421171
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
139421171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
139421171
NCBI-ProteinID:
XP_071027886
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All DBs
Position
12:complement(71026940..71038134)
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AA seq
678 aa
AA seq
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MADFELYEYQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAKKHLENNPGAKVAVLVNKV
HLVDQHYNNEFNPYLGRDYSLVSISGDCDQKDFFGCEVKNSDLVICTAQILENALTNQEE
GKHVELSQFTLLIIDECHHTHKEGVYNKIMARYVAQKLKGERRLPQILGLTASPGTGGAK
SIKGAVEHVLQICANLDSMIVSSKVYAPELKKKVPRPRKRFDIVDRRPQDPFGDHLKFMM
QFIHDFMALGPEFPVREFGTQEYEADVVILEKKGVTDRNRLLAQCALHLRQYNDALLIND
TVRMVDAFRVLESYYSTKSSTAMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQN
TLLEQFVQGGHSRGILFSKTRKSICCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQN
EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSV
YSVVAQAGGREVRRELLNECLEDLTGRAIGEVQRMEPRDFQMKITDLQTEALLTRQLAEQ
LKLKKRSRFNAATVQLSCRGCFLPVALGHDIKVIENAHHVNINPDFERYYKTGGQPALKT
FEDWEPGRVISCAACGRQWGMEMIYKNIALLPILAIENFAMETPEGRKLAKKWKNVEFTV
EEFNFSTYCHNKFPNMLD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttgagctgtatgagtaccaggaggaagtggttcagagggctctccggggg
gagaacatcatcatctggctgcccaccggaggaggaaagacacgggctgctgtttatgtg
gccaaaaaacatctggagaataaccccggagctaaggtggctgtgctggtcaacaaggtt
catttggtcgaccaacactacaacaacgagttcaatccctacctgggtcgagactatagc
ctggtgtctatcagtggggactgtgaccagaaggacttctttggctgcgaggtcaagaac
tctgacctggtcatctgtacagcacagatactggagaatgccctgaccaaccaggaggag
ggaaaacatgtggagctctcacagttcactctgctgatcattgatgagtgccaccacacc
cataaggagggtgtctacaataagatcatggcgcgctacgtggcacagaagctgaagggg
gagaggcggctgccgcagatcctgggcctcactgcctctcctgggacagggggagccaag
agcatcaaaggagctgtggagcatgtactgcagatttgtgccaacctggactcaatgatt
gtgtcgtctaaagtgtacgcccctgagctgaagaaaaaggtccccagacccaggaaaagg
tttgacatcgttgacagaagacctcaggacccatttggggatcacctgaagttcatgatg
cagtttatccatgacttcatggccttagggcctgagtttcctgtcagggagtttggcacg
caggagtacgaggcagacgtggtgattctggagaagaagggtgtgacagacaggaacaga
ctgctggcccagtgtgctctccacctgcgtcagtacaacgacgccctgctcatcaatgac
actgtgcgcatggtggatgcctttagggtccttgagtcctactatagtaccaagagctcc
accgccatggatggaaccgacttcttcctgcttggactctaccaggaaaacgaggtggag
ctgaggaaactgtcaggcgatgcccggtttgaaaaccctaaaatggggaagcttcagaac
accctgctggagcagtttgtccagggtgggcactccagagggatcttgttctccaagacc
cgtaaaagcatctgctgcttgtatgactgggtgtccaacaacccagcactgcagcgtgct
ggtatcagagcagccattctgactggcgctggcaatggcatcaattacatgacccagaat
gagcagaaggacacaatccgcaacttccgcctgggctccctcaacctcctgatctccacc
agcgtagccgaggagggcctggacatcccagaatgcaacctggtggtgcgctatgggctg
ctgaccaatgagattgcacaacagcaggccagtggccgggctcgggcgagtgacagcgtt
tactctgtggtggcccaggcgggggggcgggaggtgcgtcgggaactcctcaatgaatgt
ctggaggacttgactggcagggccatcggcgaagtgcagaggatggagcccagggacttc
caaatgaagatcactgatctccagacagaagcgttgttgacaagacagttggcagagcag
ttgaagctcaagaagaggagtcgtttcaatgctgctacggttcagctctcgtgtcgaggc
tgttttctgcccgtggccttaggccatgacattaaagtcattgaaaacgcacaccatgtc
aacatcaatcctgactttgagaggtactataagaccggcgggcagcccgcgctgaagact
ttcgaggactgggagccaggccgtgtgatcagctgtgctgcctgtggcaggcaatgggga
atggaaatgatatataagaatattgccctgctgcccattctggccatcgagaactttgcc
atggagactccggagggaagaaaattagccaagaagtggaagaacgttgagtttacagtg
gaggagtttaacttcagcacgtactgtcataacaaattccctaacatgttggattga
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