Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421205
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Entry
139421205 CDS
T10872
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp3-like
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139421205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139421205
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
139421205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
PWI
TPX2
DUF4011
Motif
Other DBs
NCBI-GeneID:
139421205
NCBI-ProteinID:
XP_071027972
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Position
2:complement(11537052..11547883)
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AA seq
711 aa
AA seq
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MSLPKREVEELRPWVERTVKKVLGFSEPTVVTAALHCVGKGLDKRKTTDQLRPFLDESAG
GFVERLFEALEESRNSRGNKGAGERNRKRDLKDVFGDEVEVGARRDVPEAGDGVPVKRKR
VPRFEEVEEPEVLPAPPTESPGMLTKIQIKQMMEAATRQIEERKKQLSFVPVSSQQRLPL
PTPQPDPPFASHLLPAPSAPSSGSAQSIAPSQAATFMNDAIEKARKAAELQARIQSQLAM
KPGILGAIGNTGGPHNLVALANLHAMGIAPPKVAEARESNKPAPLILDDMGRTVDASGNE
VELTHRMPTLKANIRAVKREQFRQQLKEKPGEDLESTIYFDGRVNIAPAQRAKKGFKFHE
QGRFEKIAQRIRTKAQLEKLQTEIAQAAKKTGIQASTKLALFAPKKMLGDGQVPIIEWWD
SYILPSNIDLSTETNFVAMELFGVTNLVEHPAQISPPVDTDKPGVTLGVYLTKKEQKKLR
RQTRREGQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQK
AHEEANAARKLTTEQRKEKKVKKLKEDLSLGVHISVYRIRNLHNPAKKFKVEANANQLYL
TGTVVLHRDVNMVVVEGGPKAQKKFKRLMLSRIKWEEHNSKRDDPDADDETKKNNRCSLV
WEGTAKERNYGEMKFKQCPTENMAREHFKKHGTEHYWDLALSQSVLESTDD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcctaaacgggaggtggaggagctacggccctgggtggaacggaccgtgaag
aaggtgctggggttctctgagcctactgtcgttactgcggccctgcactgtgtaggcaag
ggcctggacaagaggaagaccacagaccagctgcgtccattcctggatgagtctgccggt
gggttcgtggagagactatttgaggccctggaggagagccgtaattcccgtgggaacaag
ggtgctggggagaggaaccgcaagagagacctgaaggatgtgtttggtgatgaggtggag
gtgggtgcgaggcgggacgtccccgaggcaggagatggtgtgccggtgaagaggaaacgt
gtcccccgcttcgaggaggtggaggaaccagaggtcctacctgcaccccccactgagagc
cctggcatgctcactaagatacagatcaaacagatgatggaagctgccaccagacagata
gaggagaggaagaaacagctgagcttcgtcccagtgtcttcccagcagaggctgcccctg
cccactccccagccagacccccccttcgcctctcatcttctccccgctccctctgccccc
tcctcgggctcggcccagtccatcgctccctcccaggcagctactttcatgaacgatgcc
atcgagaaggctaggaaggctgcagagctgcaggcccgcatccagtcgcagttagccatg
aagcctggtatactgggagccattgggaacactggaggacctcataacctggtggcgctg
gccaacctacacgccatggggatagcaccaccgaaggtggcggaggcccgtgagtcaaac
aagccggcccctctgattctggatgatatgggtcggaccgtggatgccagcggcaacgag
gtggagctaacacaccgcatgcccaccctcaaagctaatatccgtgcggtgaagagggag
cagttccgacagcagttgaaggagaagcctggcgaggacctggagtccactatctacttt
gacgggcgtgttaacatagcacccgcccagcgagccaagaagggcttcaagttccatgag
cagggacgctttgagaagatcgcccagaggatcagaactaaggcccagttggagaagctg
cagacagagatcgcccaggcagccaagaagactgggatccaggcctccaccaagctggcc
ctctttgcccccaagaagatgctgggggacgggcaggtgcccatcattgagtggtgggac
tcgtacatcctcccctccaacattgacctatccacagagaccaattttgtggcgatggag
ttgtttggagtcacaaacctggtggagcaccctgctcagatcagccccccagtggacaca
gacaagccaggagtgactctgggagtgtacctgactaagaaggaacagaagaagctgagg
agacagactcgcagggagggacagaaagagcttcaggagaaggtcagactggggctcatg
ccccccccagaacctaaagtgcgcatctctaatctgatgagagtgctgggtacggaggca
gtacaggatcccactaaggtagaggcccacgtcagagcacagatggccaagagacagaag
gcccatgaggaggccaatgcagcccggaagctcacaaccgagcagagaaaagagaagaag
gtgaagaagctgaaagaggacctgagtcttggagttcacatctcagtctataggatccgt
aacctccacaacccggctaagaagtttaaggtggaagctaacgccaaccagctgtacctg
acgggcaccgtggtgctacaccgagatgtcaacatggtggtggtggagggaggtcccaaa
gcccagaagaagttcaagaggctcatgttgagcagaatcaaatgggaagaacacaactcc
aagagagatgatccagatgcagacgacgagaccaagaagaacaacagatgcagcctggtc
tgggagggcacggctaaggagcgtaactacggggagatgaagtttaagcagtgtcctaca
gagaacatggctagagaacactttaagaagcacgggacagaacactactgggacctggct
ctgagccagagtgtgctggagagcactgatgactga
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