KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421331
Entry
139421331         CDS       T10872                                 
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like isoform X1
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     139421331
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    139421331
SSDB
Motif
Pfam: TNRC6-PABC_bdg RRM_occluded RRM_1
Other DBs
NCBI-GeneID: 139421331
NCBI-ProteinID: XP_071028203
LinkDB
Position
12:76501115..76526896
AA seq 1928 aa
MEDKKKKKEDKKKREASQKVTEQKVKVPESTKASSTQSLATPGSVSPSPGPTPPSSPCPA
AGFAVPPGGNNANRAAVANGQPPTGTQRYMPREVPPRFRCQQDHKVLLKRGQPPLSCMLL
GGVSGRGDAPPLSQGDAPNATTSGSTDPNLGSPSPSPPHSSPSSSVAASSTYANSTWGVG
SGSQPPSQGWEKVIVDGSDLEEWPSIVGGDRVGTEGAELDGPNNSSASRTDKCTQQHLRT
GGARAGSSDSPSPPHSSSSSLTECVLSGVVWGTSSQPGIGVAAAATAEGPVLNNSKVSFL
PGTQESPLCVNSRIPGANFNPNANPSAWPALVQDGTTGVGAATTEAVPSSITTSFSASTT
HTHPLSSVNQASYQHQLHEMPARDGEHLHGDWGGLGPELGEGPNQGGRDLVDSGVVGGSE
HLSASSSSSTTSSSSWRALPPPSNLNTGASKTDGWDRVGGDAAQEEEKAGLAGDEEWVRG
NDVGSNTPEVSQGAWDGATEEGWGGTQGSTDVRGSSNPAIGSSGGGESSSSSGGSGGGGG
GGGGGISQDSASPTFATMTTAWDNQKGVDAVGEWEGQGGRGSGDPSSSSGGGSRAGSHNR
NHEHSRHRSSNPPPNPEVALQSMLSRSDLDPRVLSNTGWGQIQVQQNVAWDLDTGAASKN
EGSSCPAFPSRAVSSTGRASTYPASNSTMTTDPSAGAHMPTMITGPGPVPSKGGWDDESN
CAPPSNMRNSAPSRMPVKDIDGSQGKTSGAWGDVSTSESHGKGWGSEEQEGRDRRGGGGS
NWRDFGEQGGGRESGWGGGQEEKGTAGGWKEMGREGGGWGQRGGGNWAQREPKTVSGGWG
EGRGRGEGNTDKGSWGNIDEGGPQRSWGSGGDMGGKPHQDWCMKPHSPQIPNTQAATLKA
PNQQQHQSQTQQPPGGLGRSGGPPTQNQNQNSGWTAGPIPQIPVGPAEAPEPSGWEEPSP
QSISRKMEIDDGTSAWGDPTCYNSKNVNLWDKNSAPSGQPPPHQGQTQQGPPTSVQQPPP
RRQPAISANRDSNPGNAPGMGPGMWGGGGNLVGQSVDNGTASWGQTSDAPSGWGDPDNSS
KTAGWGNPSSKSGSKSVQESWGKGEGPVPASRHSSWDEDEDVGGVWNSTGSQTSSNYNSG
GWGQGPGGKRGNIKGGGGENWMNPMTRQFQNMGLMGEDLSLDKKLEGDKRGMNDYSCEMR
RGGRGGGGYRMPSSKDMGPGDMGPYSDKMGGHGLFGGSGGMPPSRGMRQPGMHPMNPSQG
LRGQVPHQFLSAQVPGPMLKQIPSPGSSVGGVGVGGGVFPPQLSPQQLAVLSNIYPHVQQ
FHLACQLLLQQQQQQQLLQNQRKLPQPIRQQTDPQQLARIMAILQQQRQQQQQGVVGGGS
GSSKLSPSLGGAPKQPMADSMPHPGMGGPLSDLHAKTQAMYSGLAPGGNLSGLELDGGGQ
QSRFKWMMEGHSPAPSPPDTAHHKNGPLPMPMKVREGSPYSPYELLGVDGLGMTPQGPSD
NWHRTPGSKMGTMTGTSSWPPEFQPGVPWKGIQSADPESDPYMTPGSVLGSHGPSSLSDS
DHQLLRDNTGPNPSLNTLLPSPGAWPYSASDNPLGNAHSTGTKYSDYKPSWPPEPIGHNK
PWKTSRISSQLPRPPPGLTSQKLASTSLWGSGAPRLTRGWGEGGGSQDSRFGTGSAWNDG
VASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSTRQEAAKAQG
ALHMCVLGNTTILAEFVSEEEVARYFAHSQVGGAEGASPGAGAAQGSSGTHTVVGNSGGG
SPGSERAAIGAGNNLGGNSGGGGVLGSVGPSSSGWQSLDGTGSSPEATSAQGPGLGIFAQ
WSANGAGKGVGGGVGRVEAGRSGLWGGVTPGYSSSSLWGAPQMEDRHQMSSPAALLPGDL
LGGGTDSI
NT seq 5787 nt   +upstreamnt  +downstreamnt
atggaagacaagaaaaagaagaaagaggataaaaagaaaagggaagcttcccagaaggtg
actgaacaaaaagtcaaagtgccagaatcaaccaaggccagctccacgcagtcactagcc
actcctggctctgtgtctcccagccctggccccactccaccatcgtccccctgccctgca
gctgggttcgctgttcctccgggtgggaacaatgcaaaccgggcggctgtggccaacgga
cagccccccaccggaactcagcgctatatgcccagagaggtgcccccacgattccgctgc
cagcaggaccacaaagtgcttctgaagaggggccagccaccactgtcctgcatgctgctg
gggggagtgagcggtaggggagacgcaccccctctttcacagggagatgcccccaatgca
accacatctggatccacagatcccaatctgggttcaccttctccttcaccccctcactcc
tcaccctcatcttcagttgctgcttcttcaacttatgcaaattccacatggggggtgggc
tctggcagccagcccccttctcagggctgggagaaggtgatagtggatgggagtgacctt
gaagagtggcccagcattgtgggtggggatagagtgggtaccgagggagcagagctggat
ggccccaacaacagcagtgcctcacggactgacaaatgcacccaacagcatctgaggaca
ggaggcgcaagagctgggagttcagacagtccctccccaccccactcttcctcctcgtca
ctcactgaatgtgtcctgtctggtgtcgtgtggggcacttccagtcagcctggaattgga
gtggctgcagcagcaacagcagaggggccagtgctcaacaattccaaagtctcctttctt
cctgggactcaggagagccctctttgtgtgaacagtcggattcctggtgccaacttcaac
cctaatgccaacccttcagcctggcctgcccttgtgcaggatggaacgacaggggttggt
gcagctaccaccgaagctgtgccctcatccatcacaacatccttctctgccagtaccacc
catactcatccactctcctctgtgaatcaagctagctatcagcaccaactccatgaaatg
cctgccagggatggagaacatctccatggggactgggggggcttggggcctgagcttgga
gaaggaccaaatcaaggaggcagagaccttgtggacagtggggttgttggagggagcgag
catctctctgcctcgtcatcctcctccacaacctcttcctcttcatggagagctttgcct
cccccctctaacctcaacacaggtgcctctaagactgatgggtgggacagagtaggggga
gatgcagctcaggaggaggagaaagctgggttggcaggagatgaggagtgggtcagggga
aatgatgttggctcaaataccccagaggtatctcagggagcatgggatggggctacagag
gagggttggggcggtacacaggggtcgacagatgtcaggggttccagcaacccggcaata
ggaagtagcggtggaggcgagagcagcagcagcagtggaggtagcggtggtggtggtggt
ggtggtggcggcggcatatcccaggattctgcctcaccaacatttgctactatgacaaca
gcttgggacaatcagaaaggggttgatgctgttggggaatgggaaggtcaaggtggcaga
ggaagtggagacccctcatcctccagtggaggagggtccagagctgggagtcacaatcgg
aaccatgagcattcccgccaccgctccagcaacccaccccccaaccctgaagtggcctta
cagagcatgctcagccggtcggacctggatcccagggtgctgtccaacactggatggggg
cagatccaggtacagcagaatgtggcctgggacctggatacaggagcagcaagtaaaaat
gagggaagcagttgtcctgcatttccatctcgagctgttagttctactggtcgggcatct
acttaccccgcaagcaacagcacaatgactactgatccatctgctggggcccatatgcct
actatgatcactggtcctggccctgtaccttcaaagggcggctgggatgatgagtcaaat
tgtgctccaccatccaacatgcggaattctgctccctccaggatgccagtgaaagatatt
gatggcagccagggaaagacgagtggagcctggggtgacgtcagtacttcagagagccat
ggcaaaggctggggcagtgaggagcaggaggggagagaccgcagagggggcggaggaagt
aactggagagatttcggagaacagggtggaggaagagagagtggctggggaggtggtcag
gaggagaaggggactgcagggggttggaaagagatgggtagggagggaggtggatgggga
caaagagggggaggcaactgggcgcagcgtgaacccaagacagtcagtggaggctggggg
gaagggaggggcagaggtgaaggcaacacggacaaaggatcttggggtaacatagatgag
ggaggcccacagaggagttggggaagtggaggtgacatgggcggtaaaccgcaccaggac
tggtgcatgaagccgcattcaccacagataccaaacacccaagcggcaacactgaaagcc
ccaaatcaacagcaacaccaatcacagacccaacagccaccaggaggcttgggcaggtca
ggaggtcctcccacccagaatcagaaccaaaactcgggctggactgctggccccatccct
cagatccctgttgggcctgctgaggcccctgagcccagcggttgggaggagccctcccca
cagtccatcagccgcaagatggagattgatgatggcacttcagcctggggcgatcccacc
tgctacaacagcaagaatgttaacctgtgggataaaaacagtgccccctctggtcagcca
ccaccacatcaaggccaaactcaacagggtccacctacatccgtacaacagccaccacca
aggagacagcctgcgatctcagctaaccgggactcaaaccctggcaatgcacctggaatg
ggcccaggtatgtggggagggggtggcaacctcgttggacaatctgtggataatggcact
gcttcctgggggcagacttctgatgcaccatctggctggggagacccagataactcaagc
aaaactgctggttggggaaacccctcatctaaatctggttcaaagtcggtgcaagagagc
tggggcaaaggagagggcccagttccagcctctcgacactccagttgggatgaggatgag
gacgttggtggagtttggaacagcacaggctcacagaccagcagcaactacaactctggt
ggctgggggcaaggccccgggggaaagcgaggcaacatcaagggtggaggtggagagaac
tggatgaacccaatgacacgacaattccaaaatatgggactcatgggtgaggacttgagt
cttgataaaaagttggaaggagataagagagggatgaacgactacagctgtgaaatgcgg
agaggaggaagaggtggcggaggctaccgtatgcccagttccaaagacatggggcctgga
gacatgggaccttacagtgacaagatgggtggtcatggtttatttggtggcagcggtggg
atgcctccgtctcggggaatgcgccagcctgggatgcatcccatgaacccctcccaaggg
ttacgcggacaagtccctcatcaattcttgtctgcgcaggtgccgggtcccatgctaaag
cagataccctctcctggcagcagtgttggaggagtaggtgtcggaggaggggtgttccca
cctcagctctcgccacagcaacttgccgtgcttagtaacatttaccctcatgtgcagcaa
ttccacctggcttgtcagctccttctgcagcagcaacagcagcagcagctcctgcagaac
cagaggaagttgccccagcctatacgccagcagactgatccacagcagctggctaggatc
atggctattctgcaacaacagagacagcaacaacaacagggagtggtaggcggaggcagt
gggagctccaaactgtccccatctcttggaggggcaccaaaacagccgatggcagactcg
atgcctcaccctggtatgggtgggcccttgtcagatcttcatgccaaaacacaggcgatg
tactctggtcttgctcccggaggcaatctgtctgggctggagctggatggaggagggcag
cagtcccgcttcaaatggatgatggagggtcactctccggccccctctcccccagataca
gcccatcacaagaatggtcctttacccatgcccatgaaagttcgagagggctccccatat
tcaccgtatgagttgctcggagttgatgggttgggaatgacccctcagggcccttctgac
aactggcaccgtacccctggaagcaagatgggcaccatgactgggacatccagctggccc
ccagagttccagcctggagtgccctggaaaggcatccagagtgccgacccggagtcggac
ccgtacatgacccctggcagtgtgctgggctcccatggaccctccagcctcagtgactct
gaccaccagttactgcgagacaatacagggccaaacccctccctcaacaccttgctgcct
tcaccaggtgcctggccctacagtgcctcagacaacccccttggcaatgcacacagcaca
ggtacaaagtactctgactacaaacccagctggcccccagagcccattggacacaataag
ccgtggaagaccagtcgcatcagttcccagctgccacgcccccctcctggactgaccagt
cagaaactggcctcgacatccctatggggcagcggagccccacgtttgaccaggggctgg
ggagagggcgggggcagtcaagattcaagatttgggacaggctcagcgtggaatgatggt
gtggcctccagaggcagctgctggctactgctcagcaatctcacccctcagattgacggt
tccacgctacggactatctgtatgcagcacggccccctgctgacctttcacctcggcctg
acccagggcagcgccctgattcgttacagcacacgtcaggaagcagccaaggcccagggt
gcactgcacatgtgtgttctggggaacaccacaatcctggcagagtttgtgagtgaggag
gaagtggctcgctattttgcacattcccaggttggaggtgcggagggggccagcccaggg
gcaggggcggcccagggctcgtcaggaacgcacacagtggtgggcaacagcggagggggc
tccccggggagtgaacgagcagcaattggagcaggaaacaatttgggtggaaacagcggt
ggaggaggggttctgggtagtgtggggccttccagctctggctggcaaagtttggatggt
acgggcagctctccggaggccacctcagcccaaggtcctgggcttggtatttttgctcag
tggagcgccaacggggctgggaagggggtagggggtggggtgggacgggtagaggcaggg
aggtctgggctctggggtggtgtgaccccaggttactccagcagcagcttgtggggtgca
ccccaaatggaggacaggcaccaaatgagcagcccagctgccctgttgcctggtgacctg
ctgggaggaggcactgactccatctga

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