Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421363
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Entry
139421363 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139421363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139421363
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139421363
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139421363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
139421363
NCBI-ProteinID:
XP_071028273
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All DBs
Position
2:12140797..12151952
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AA seq
958 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSLVSMAAIVGG
NPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTAPS
LPTPTTPISASPNSLPQVLPGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASL
NTMAGLLSGSTHAPYAQAAALGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLGL
LGSSPAHGSLTGGILGLVSGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVV
GSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQHMDNGP
SLISSITLPPSSPSPSFSDSITGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQV
PEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSS
AAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIR
QYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQS
WRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggataat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaacaaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccaacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgtccttttcctcgtcc
gccaattccgggtcctcttcttcctcctctcttgtatccatggccgccattgtcggaggc
aaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtacaacaa
catcagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaacaaccc
caaacaaaaccttgcacccccagcccacccagccacccccttctctccaccgccccctct
ctccccacacccaccacacccatctcagcctccccaaactccctgccccaggtcttgcct
ggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatgacg
gggacaagcagtgccaactcaatgtctggtcttggcctgactgggatgtctgcctctctg
aacaccatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagccgcg
ttgggaggcctgggtctgagtaccactacccagtccagtgtctcagtggagagctcctcc
atccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggcctg
ctggggtccagcccagcacacggctccctgactggggggatcctgggcctggtgtctggg
cagagtgtgatccctgggccccctctgatccctctcagcccggtcggtgctgcccctggg
ggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagtagtt
gggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcacaagt
tacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaatca
cagagcagccagccttcctcgctgacctcctcagccagtcagcatatggacaacggtccc
agcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttccgacagt
atcaccggtggagggagtctcctcaacggaccccactcctacacacaggcctctgagggc
ctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcaggtc
ccagagccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcag
gccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggt
ctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcgtcg
gctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccccct
tccctgggggtgtgtcccctgggtcccactccactctccaaggaccaggtgtaccaacag
accatgcaggagtctgcttggacacacatgccacacccctcagactccgagaggatcagg
caatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccac
cactcagactctatagagttctaccagagactgtccacagagacgctcttcttcatcttc
tactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcg
tggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatc
actgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagagg
aagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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