Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421413
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Entry
139421413 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04137
Mitophagy - animal
ocla04144
Endocytosis
ocla04340
Hedgehog signaling pathway
ocla04350
TGF-beta signaling pathway
ocla04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139421413
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
139421413
04350 TGF-beta signaling pathway
139421413
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139421413
04137 Mitophagy - animal
139421413
09144 Cellular community - eukaryotes
04520 Adherens junction
139421413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139421413
04121 Ubiquitin system [BR:
ocla04121
]
139421413
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139421413
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139421413
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139421413
Autophagy
Mitophagy
Other mitophagy associated proteins
139421413
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139421413
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
139421413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
139421413
NCBI-ProteinID:
XP_071028389
LinkDB
All DBs
Position
12:79090933..79154917
Genome browser
AA seq
827 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDIVKNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDMNKL
GLNDSDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPGRPLSCIVDENTPILSTNGATPTIPCVPSSDQRAQERRVRSQ
RHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLRGFTADIS
GMPSASMLSAHSLQPYCTCGSETPLTQACVFHGLPQAQRRTHINTDLSNVNCEELGPLPP
GWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSPNGSRSGIEIQNSPISRQIQ
LKEQAQQALVSPGNLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREE
IFEESYRQVMKMRPKDLWKRLMVKFKGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSR
DDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLDD
MESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKIIQVTQDTKKEY
VRLYVNWRFLRGIEAQFLALQKGFNEVISQHLLKAFDEKELELIVCGLGKIDINDWKSNT
RLKHCTPDTNIVKWFWKAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIH
QIDASSNNLPKAHTCFNRIDIPPYENYDKLYDKLLTAIEETCGFAVE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaggagttcggcgaaatggtccggttaaactgcgtttaacagtcctctgt
gccaaaaacctggtgaagaaagatttctttcgcctccctgatccctttgccaaagtggtg
gtggacggctcaggacaatgtcactccacagacatcgtgaagaacacccttgaccccaag
tggaaccagcactacgacctatatattggcaagtctgactccatcaccatcagcgtgtgg
aaccacaagaagatccataagaagcagggggctggcttcctgggctgtgtacgccttcta
tccaacgccatcaaccgcctcaaagacaccggctatcagagattggatatgaacaagctg
ggcctcaatgacagtgacacagtgaggggtcagatagtggtgagcctgcagtccagagac
aggataggcacaggaggcccagtggtggactgcagccgtctgtttgacaatgacctgcca
gacggctgggaggagcggaggactgcgtctggccgaatccagtacttgaaccacatcaca
cgcaccacacagtgggagaggcctaccaggcctgcatcggagtactccagcccgggccgg
cctctcagctgtatcgtggatgagaacacgcccatcctgagcaccaacggggccacgccc
accattccatgtgtcccgtccagcgaccagcgggcccaggagagacgcgtccgctcccag
agacacaggaactacatgagcaggacacacctccacacacccccagatctgcccgaagga
tacgagcagaggaccacgcagcaaggccaggtctacttcctccacacccagacaggagtc
agcacatggcacgaccctcgagtgcccagggatctgagaggattcacagcagacatctct
ggcatgccctctgcctccatgctctcagcacacagccttcagccctactgtacatgtggc
tcagagacaccactcactcaggcatgtgtgtttcatggattaccacaggcccagaggaga
acacacatcaacacagacctgagtaatgtaaactgtgaggagctgggcccactgccccct
ggctgggagatcaggaacacagccaccggccgggtctactttgtggaccacaacaaccgc
accacgcagttcacagacccgcgcctctccgccaacctgcatctagtccttaacccaagc
cccaatggttcccgcagcggcatcgaaattcagaacagtccgatcagccgtcagatccag
ctgaaggagcaggcccagcaggcactggtgtctccaggtaatctgccagaggaggccgag
tgcctcacggtgcctaagtacaagagggacctggtgcagaagctgaagatcctccgccag
gagctgtcccagcagcagccccaggcaggtcactgccgcatagaggtgtcccgcgaggag
atctttgaggagtcttaccgccaggtgatgaagatgaggccgaaggacctgtggaagaga
ctgatggtgaagtttaaaggggaggaggggctggactacggaggagtggccagggagtgg
ctgtatctgctgtcccatgagatgctgaatccgtactacggcctgttccagtactcccgc
gatgacatctacaccctgcagattaaccccgactcggccgtcaacccggagcacctgtcc
tacttccactttgtgggtcgtattatgggcatggcggtgttccacggccactacatagac
gggggcttcaccctgcccttctacaaacagcttctggggaaacccatcaccctggacgac
atggagtcagtggacccagacctccacaacagcctggtctggatcctggacaatgacatc
acaggcgtgttggaccacaccttctgtgtggagcacaatgcctacggggagatcatccag
cacgaactcaaacccaacggcaaaatcatccaggtcacccaggacaccaagaaggagtat
gtcaggctgtatgtgaactggcgtttcctgcgaggcatcgaggctcagttcctggccctg
cagaagggcttcaacgaggtcatctcacagcacctcctcaaggccttcgacgagaaagag
ctggagctcatagtgtgtggcctgggtaagatcgacatcaacgactggaagtccaacacg
cggctgaagcactgcacccctgacaccaacatcgtcaagtggttctggaaggccgtggag
tcatatgatgaggagcgccgggccaggttgctgcagtttgttaccggctcctccagggtc
cccctgcaaggcttcaaagccctccaaggtgctgcaggcccacgactcttcaccatccac
cagatcgatgccagctccaacaacctgcccaaagcccacacctgcttcaaccggatcgac
attcctccctacgagaactatgacaagctgtatgacaagctgctcactgctatcgaggag
acgtgtggctttgctgtggagtga
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