Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421424
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Entry
139421424 CDS
T10872
Name
(RefSeq) THO complex subunit 4-like isoform X1
KO
K12881
THO complex subunit 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139421424
09122 Translation
03013 Nucleocytoplasmic transport
139421424
03015 mRNA surveillance pathway
139421424
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139421424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139421424
03041 Spliceosome [BR:
ocla03041
]
139421424
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139421424
TREX complex
139421424
Spliceosome [BR:
ocla03041
]
Complex C
Other components
EJC/TREX
139421424
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139421424
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
139421424
NCBI-ProteinID:
XP_071028404
LinkDB
All DBs
Position
12:79745407..79748834
Genome browser
AA seq
268 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGVGRGGGVGRGAAGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASVGGGGGGAGVETGGKLL
VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV
PLDGRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGGFRGMQRGRGAGRGGGRGRG
GRGGSTKPLSAEELDAQLDAYNARMETS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaatggatatgtcgctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgtgggc
cgaggtggtggtgttggccgtggagcagctggtggaggctttgggggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttc
aatgccagtgttgggggcggcgggggtggcgctggtgtggaaaccggagggaagcttctt
gtctccaatctcgactttggcgtttcagacgcggatattcaggagctctttgcagagttt
ggtacactgaagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgca
gatgtccactttgagaggaaggcagatgctctaaaagctatgaaacagtacaacggtgta
ccacttgatgggcgtcccatgaacatacaacttgtcacatcacagatcgacacacaaaga
cgaccacccatgcagggtatgaaccgaggaggtggtggcatgaacaggggtcgtggtggt
gggtttagagggatgcagagaggacgtggagcaggacgtggaggaggcaggggccgaggt
ggccgcgggggaagcactaagccactttccgctgaagagctggatgcccagctagatgcc
tacaatgccaggatggaaactagctaa
DBGET
integrated database retrieval system
