Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421480
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Entry
139421480 CDS
T10872
Name
(RefSeq) coronin-1A-like
KO
K13882
coronin-1A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139421480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139421480
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139421480
04147 Exosome [BR:
ocla04147
]
139421480
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Coronins
139421480
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139421480
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139421480
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1899
WD40
WD40_4
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
ANAPC4_WD40
Trimer_CC
Beta-prop_EML
WDCP
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_HPS5
bZIP_1
DUF7310
BLOC1_2
TSC22
DUF5798
Beta-prop_SPT8
DivIC
SOGA
Beta-prop_NUP159_NUP214
DUF6779
Seryl_tRNA_N
Motif
Other DBs
NCBI-GeneID:
139421480
NCBI-ProteinID:
XP_071028528
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Position
12:complement(82561508..82571136)
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AA seq
456 aa
AA seq
DB search
MSRKVVRASKFRHVFGQGVKADQCYDDIRISQMTWDSNFCSVNPKFVAMIVDASGGGAFL
VLPLNKTGRIDMSQPTVCGHTGPVLDIEFCPHNDNIIASGSEDCSVMVWEIPEGGLVTPL
NDPVVKLEGHSKRVGILSWHPTAHNVLMSAGCDNVVILWNVACGEAMVRIDSVHPDLIYS
ACWNRDGSQILTSCKDKTIRVLDPRKGTVIAEKEKTHEGSRPVKAVFVSEGKILSTGFSR
MSERQVALWDPKSFGEPLTLQELDTSSGVLLPFFDPDTGIVYLCGKGDSSIRYFEVTDEA
PYVHYLSMYSSKESQKGMGYMPKRGLEVNKCEIARFYKLHERKCEPIVMTVPRKSDLFQE
DLYPDTMGPEPSVEANDWFEGKEGQPILISLKDGFATTTKSKEFKVHKSLLKTTSAAMGH
QHDNTGEVHALQKEVKALKETVEELTKRVSKLESKN
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaaggtagtcagggccagtaagttccgtcatgtcttcggccagggggtgaag
gctgaccagtgctatgatgacatccgcatctcccagatgacctgggacagcaacttctgc
tctgtcaaccccaagttcgtggccatgattgtggatgccagcggaggaggggccttccta
gtgctgcctctgaacaagacgggtcgtattgacatgtcccagcccacagtctgtggacac
acaggcccagtgctggatattgagttctgtccccacaacgacaacatcattgccagtggt
tcagaggactgcagtgtcatggtttgggagatcccggagggtggcctggtcacgcccttg
aacgaccccgtggtgaagctggaggggcactccaaacgcgtgggcatcctcagttggcac
cccactgcccacaatgtgctcatgagcgcaggctgtgacaacgtggtgatcctgtggaac
gtggcgtgtggagaggccatggtgaggatcgactcggtccaccctgacctcatctacagt
gcctgctggaacagggacggctcccagatcctcacctcctgtaaggacaagaccatacgt
gtgctggacccccgcaagggcacagtcatcgccgagaaggagaagacacacgaaggctcc
aggcctgtcaaggctgtgtttgtgtccgaagggaagatcctgagcaccggcttcagtcgc
atgagtgagagacaggtggcactttgggacccgaagagctttggggagccactcaccctg
caggagttggacaccagcagtggtgtcctattgcccttctttgaccctgacactggcatc
gtctacctctgtggcaagggtgacagcagtatccggtactttgaggtgacggatgaggct
ccctatgttcactacctgtccatgtacagcagtaaggagagtcagaagggcatgggctac
atgcccaagaggggcctggaggtcaacaagtgtgaaatcgccaggttttacaagctccat
gagaggaagtgtgagcccattgtcatgacggtgccccgcaagtctgacctgtttcaggag
gatttgtacccagacaccatgggtccagagccgtctgtggaggccaatgattggtttgaa
ggcaaagagggccaacctatcctgatctccttgaaggacggttttgcgacaaccaccaaa
tccaaagagttcaaagttcacaaaagtcttctgaagaccacatcagcagccatggggcat
cagcacgataacactggggaggtacatgccttgcagaaggaggtgaaggctctgaaggaa
acagtagaggagctgaccaagcgcgtgagcaaactggagagcaagaattga
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