KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421495
Entry
139421495         CDS       T10872                                 
Name
(RefSeq) DDB1- and CUL4-associated factor 7-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    139421495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139421495
   03036 Chromosome and associated proteins [BR:ocla03036]
    139421495
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     139421495
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     139421495
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_EIPR1 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_RIG_2nd Beta-prop_Aladin WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_RFWD3 Beta-prop_WDR3_2nd MIOS_WD40 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 WD_LRWD1 WD40_MABP1-WDR62_2nd
Other DBs
NCBI-GeneID: 139421495
NCBI-ProteinID: XP_071028550
LinkDB
Position
12:82836849..82850807
AA seq 342 aa
MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVPIVGLEEESSEFI
CRNTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRIWRVSETETRLECLLNNNKNSDFC
APLTSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
RAIEDPILAYTAEGEINNVQWASTQPDWIAIGYNNCLEILRV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgtcgctccacggtaagcgaaaagagatctacaaatacgaagcgccatggacggtgtat
gcaatgaactggagcgttcgtcccgacaaacgctttcgcctggcccttggaagtttcgtt
gaagaatataacaataaggtgccgattgttggtctggaggaggagagttcagagttcatc
tgcaggaacacctttgaccacccctaccccaccaccaagatcatgtggatcccggacagc
aagggtgtttacccagacctgcttgccactagcggggactacctgcgcatctggagggtc
agtgaaacagagacgcgtttggaatgcttactgaataacaacaagaactctgacttctgt
gccccactcacctcgtttgactggaatgaagtggatcctaatctactgggcacctccagc
attgacaccacctgtactatctgggggttggagactggccaagtgctgggcagagtcaac
ctcgtatccggccacgtcaagacccagctcattgctcatgacaaagaggtgtatgacatc
gcattcagccgtgcaggcggtggtcgggacatgtttgcgtcggtcggagcggacggctca
gtacgcatgtttgacctgcggcacctagaacacagcaccatcatctatgaagatccccag
caccaccccctactgcgcctctgctggaacaaacaggaccccaactacctggccaccatg
gctatggacggcatggaggttgtgattctggacgtgcgtgttccctgcacgccggtggcc
cgcctcaacaaccaccgggcctgtgtcaacggcatcgcctgggctccccactcctcctgt
cacatctgcactgcagccgacgaccaccaggcgctgatatgggacatccagcagatgccc
agggccatcgaggaccctattctggcctacacagccgagggggagatcaacaacgtccag
tgggcctccacccagcctgactggatcgccatcggctacaacaactgcctagagatcctg
cgggtctaa

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