Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421543
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Entry
139421543 CDS
T10872
Name
(RefSeq) long-chain fatty acid transport protein 1-like isoform X1
KO
K08745
solute carrier family 27 (fatty acid transporter), member 1/4 [EC:6.2.1.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
139421543
09158 Development and regeneration
04382 Cornified envelope formation
139421543
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ocla01004
]
139421543
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139421543
Lipid biosynthesis proteins [BR:
ocla01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
139421543
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC27: Fatty acid transporter
139421543
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
139421543
NCBI-ProteinID:
XP_071028648
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Position
12:84800675..84814240
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AA seq
648 aa
AA seq
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MRNAASASFSLGSLGLLRLFGVPWSWSLAAGFGVFLGTGGWKYLYIVVRTAKRDLNGLYV
LLRVKIALWHHLRRNSNIPSIFAQTVKQHPNKPALIYDATGETWTFTQLDLLSNAVAQWA
LAQGWAPGDVVALFMESRPLQVALWLGLAKVGVEAALINFNLRRDALLHCVGVSVSRGIV
FGAELAGAMLEVSSSLSPSMVRFCTGELSVDCLASLSAQNLDYILASAPTLPPPPCIPPK
SFNDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGYHAFRMRQDDIIYDCLPLYHSAGNI
MGVGQCLINGLTVVVKKKFSASRFWEDCIKHNCTVVQYIGEICRYLLSQPVRPSEKGHRV
RLAVGNGLRPSVWEAFTERFGVAQVGEFYGATECNCSIANMDGKVGACGFNSRILPNVYP
ICLMKVDEETTELVRDRHGLCVPCRPGEPGLLVGRINQQDPLRRFDGYANQDATRKKIAN
NVFKKNDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGTLSGLLGQADVA
VYGVAVPDVEGKAGMAAIADPTGTFDCDAFLREVQQALPPYARPVFLRISPQVDTTGTFK
IQKTRLQREGYDPRLSTDQIYFLNSRAGRYEAVNEELHSAIVEGRMAL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaatgcagcgagtgcctctttttctctgggatcgctgggtctgctgcgtctcttc
ggggtcccctggtcctggagcttagcagcaggcttcggggtctttctgggcacaggtggt
tggaagtacctctacatcgtagtccgtactgccaaaagagacctaaatggcctttacgtg
ttgttacgagtcaagatagccttgtggcaccacctacggcgcaacagcaatatcccctcc
atctttgcccagacagtgaagcagcacccaaataaacccgccctcatctacgatgccaca
ggagagacgtggaccttcacccagctggacctgctgtctaacgctgtggcccaatgggct
ctggcccagggctgggccccgggggatgtggtggccctcttcatggagagccggcccttg
caggtggccctctggctgggcctggccaaggtgggggtggaggcagcactcatcaacttc
aacctgcggagggatgcactcctgcactgtgttggagtgtctgtgtccagagggatcgtg
ttcggagccgagctggctggtgccatgttggaggtgagctcatccctgagcccgtcgatg
gtgcggttttgtacaggagagctcagtgtagactgtctggcctccctgtctgcccagaat
ctggactatatcctggcctcggcccctacactgccccctcctccctgcatcccacccaag
agcttcaatgatcgtctgttctatatatacacctcaggcaccacaggactcccgaaagct
gccatagtggtgcacagtcggtattaccgtattgctgcttttggctaccatgctttccgc
atgcgccaggatgacatcatctacgactgccttcccctctaccactctgcaggtaatatc
atgggtgtaggccagtgtctcatcaatggactcactgtggtggtgaagaagaaattctca
gccagtcgcttctgggaagattgcatcaagcacaactgcactgtggtgcagtacataggg
gagatctgtcgctacctgctgtcccagccggtgcggccatctgagaagggtcaccgggtt
cgcctggcggtggggaatgggctgcgccctagcgtctgggaggccttcaccgagcgcttt
ggggtggcccaggttggggagttctacggagccaccgaatgcaactgtagcatcgccaac
atggacggcaaggtgggagcttgtgggttcaacagccgcatcctgcccaatgtgtatcca
atctgcctcatgaaagtggatgaggagaccacagagctggtgagggacaggcacggcctg
tgtgtgccctgccgtcctggggagccagggctgctggtgggaaggatcaaccaacaggac
ccgctacggaggtttgatggctacgccaaccaggatgccaccaggaagaagattgccaac
aacgtcttcaagaaaaatgactcggcatatctgtcaggggatgtgttggtgatggatgag
ctgggctacatgtacttccgggaccgcagtggagacacgttccgctggagaggagagaac
gtctccaccaccgaggtagagggaacactgagtggtctgctgggccaggccgatgtggct
gtgtatggggtagctgtaccagatgtggaagggaaggcagggatggctgccatcgcagac
ccaacagggacatttgactgtgatgcgttcctgcgagaggtccaacaggccctgccccct
tacgcacgtcccgtgttcctacgcatctccccacaagtagacaccacaggtacctttaaa
atccagaagacccggttgcagagggagggatacgatccgcgcttatcaaccgaccagatt
tactttttgaactccagagcagggcgttatgaggctgtgaatgaggagctacacagtgct
atagtggagggtagaatggctctatga
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