Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421562
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Entry
139421562 CDS
T10872
Name
(RefSeq) general transcription factor IIF subunit 1-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139421562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139421562
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
139421562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
139421562
NCBI-ProteinID:
XP_071028682
LinkDB
All DBs
Position
12:complement(85872690..85885599)
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AA seq
541 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKEGDVKGKGKKKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEVGEEKAK
SNKEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSE
DSDIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSASTSNTLRAAASKL
EQGKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTE
EAVRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLT
E
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgagtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggcgcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagagggccggacgatgacgacgaggagggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgatgagagtgacagcagtggaggagaagatggagacagcaag
cccaagaagaaagagggggatgtgaaggggaaggggaagaagaagaagaagaagaagaag
aggggcagtgacagcgaggcgaatgaggacagtgacgatggagactttgagggcctggaa
gtcgactacatgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggccaag
tccaataaagaggccgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagc
gaggaggagaaacagaacgaggaagaggggaaagaggaggaggaggaagaggaagggaag
aagaccccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggag
gacagcgacatcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcct
cctaagcgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctgga
acaccgtccatagactccgcctccacctccaacacactccgagccgccgctagcaaactg
gagcaaggtaagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctg
aagatggagtccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagc
acgccacagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggag
gaggcggtgcgtcgctacctgatccggaagcccatgaccaccaaggacctgctgaagaag
ttccagaccaagaggactggcctgagcagcgagcagacggtcaacgtcctggcccagatc
ctcaaacgcctcaaccccgagaggaagaacgtcaacgacaagatgcacttctacctcaca
gagtaa
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