Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421595
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Entry
139421595 CDS
T10872
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139421595
Pattern recognition receptors [BR:
ocla04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
139421595
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GFIT
Motif
Pfam:
LRR_8
TIR
TIR_2
LRR_4
LRR_5
LRR_EndoS
LRR_9
Motif
Other DBs
NCBI-GeneID:
139421595
NCBI-ProteinID:
XP_071028747
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All DBs
Position
12:complement(88423974..88428670)
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AA seq
964 aa
AA seq
DB search
MRSMFSHPAVLFLWIQSSSGWMHPKCQIYDSSEDLEHFPTWICSHIPHHAERYTAACQDV
TAIEEDLLGLPPNINTLCIFMTHGENRSMSLGFFSQFQDLEYLCIKGCFTQILPSGNSHL
PNLQHMYLSNWGMDYDCCECHIGPHTFRDLVNLSYLTLWSYRLSAMAPDVFHGIPLLQSL
IIREPYLEDLSEIACRIINIKSLVRLYVDATNIQSLNISNCSVLNTNESMTPVFINLARI
DLSFGEITHIEEGSLAWLQNLTRLTGVFSQEVLLDLPLSGIKQIQDFSCYGINVIDIESI
CNVVFLLSIKKLFVNNANTSSLSMSSVELCTGLEYMYLSVPLSFHPTTHLEWNFISSLEN
LNQLKIDGLEDNRLDICSFQKQPITWLTKFTLGLKNLMPFAKQFICLVKLQYLDIKHNLI
SNIEDFAFLGLTNLESLDITSNKITQINANTFYGLHSLTWLDLRNNPLIHNIEAMSFTHL
MSLRQVFLGQVHNPLTEPVIKLNLTLIFGGILSQLTHLYISSAMRPMQLTIGSNITSKQN
LSLQLKGQTVSFQDCDRPFFQSVTHLHADAEEFLCGSEFMGKYFTSVETFDYRSKLSAKR
VDLTSINQLIHLRKLTLRQVDLLIQRSADIIFHNLTKLEDLELDNCRIYSLEGSLTKDLK
SLKRVYLHIENIYNVFYSFTEPLSSLKHLTFDNLQMFCSCDNAWLITWAKGCMQVEVIML
GPYAKTGMYALEDLICLSDNGIDTPNFVRYTEANCTTEVGFVLFVATGLGVLFFMLVVLV
HNLAGPYLLPLYHITLGWLLEAMRSNTRGRYHYDAFVSYSGKDERWVVEELLPNLEQRGP
PFLRLCLHSRDFQLGKDIVENITDSLYRSRHTLCLVSRHYLRSNWCSLEMKLATYRLQLE
QRDILLLVFLEKIPPRRLSAHHRLARLLKTRTYLDWPQDPLQHQAFWDRLWAKLKPQTEL
EIRG
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgagatctatgttttcccaccctgccgtcctgttcctgtggattcagagttctagtgga
tggatgcatcctaaatgccagatttatgacagtagtgaagacttggaacactttcccacc
tggatctgcagccacatacctcatcatgcagaacgttacactgctgcctgtcaagatgtc
acagccatcgaggaggatctacttggacttccccctaatatcaataccctctgcatattt
atgacacatggtgaaaatagatccatgtctctgggctttttctctcagtttcaggatctg
gagtacctgtgcattaagggctgttttactcaaatccttccatctgggaacagtcacctt
ccaaatctgcaacatatgtacttaagtaattggggaatggactatgattgctgtgaatgt
catattgggccccatacattcagagatctcgtcaacctaagttatttgactctttggagt
tatagactgtcagcaatggccccggatgtttttcatggcattcctctgttacaaagtctc
atcattagggaaccctatttagaggatttgtcagagatagcatgcagaataatcaatatt
aagtcactggttaggttatatgtagacgcaacaaacatacaatcgttaaacatttcaaac
tgctccgtcttaaacaccaacgaaagcatgacacctgtttttataaatctagcgaggatt
gacttatcatttggtgaaataacacatatagaggaaggttcactggcttggctccagaac
ctcacaaggttaacaggggttttcagccaggaagtcctactggaccttcccctgtctggg
attaaacaaatccaggacttcagttgctatgggatcaatgtcattgatattgaaagtatc
tgtaatgtagtgtttttgctttcaatcaagaaattatttgtaaacaatgccaatacaagc
agcctctctatgtccagtgttgaattgtgcactgggctagaatatatgtatttaagtgta
cctttgtctttccatcctactacccatttggaatggaattttatttccagtcttgaaaac
cttaatcaattaaaaatagacggcctggaagacaacagactagatatttgctctttccaa
aaacaaccaataacatggttaacaaaattcactttagggttgaaaaatctaatgcctttt
gctaaacaatttatctgtcttgttaaactgcagtatctggatattaaacataatttaatt
tcaaacattgaagactttgctttcctgggattaacgaatctggagtccttagacattaca
agtaataagataacacagataaatgcaaacactttttatggtttacatagtttgacatgg
ttagacctcaggaacaatccacttattcacaacatagaggcaatgtctttcacacacctc
atgtctcttagacaagtgtttctcgggcaagtgcacaacccactaacagaacctgtgatc
aagctgaatctgacacttatatttggtggcattctgagtcaactgactcatctgtacatt
agttcagctatgaggccaatgcagttgactatcggcagtaacatcacatctaaacagaac
ctgagtctccagctcaaaggccagacggtgtcatttcaggactgtgacagacctttcttt
cagtctgtaacccatcttcatgctgatgctgaagaattcctttgtggatctgaattcatg
ggaaagtacttcacgtctgtggagacatttgactacagatcgaagctttcagctaaaagg
gttgatttaacatcaattaatcagctgattcacctgaggaaactgactctacgacaggtg
gatcttttaatacagcgttctgccgacatcatttttcacaacttgaccaaactggaggat
ctggaacttgacaactgcaggatttactctttagaggggagtttaactaaagacttgaaa
tctttgaaaagagtgtatttgcatatagagaacatttataatgtattctatagctttact
gaacctctctctagtcttaagcatttgacatttgataatttacagatgttttgcagttgt
gacaatgcttggctcattacatgggcaaaggggtgcatgcaggttgaagtgatcatgctt
ggtccgtatgctaaaaccggtatgtatgctttggaggacttgatatgcttgtcggacaat
ggaatagacacacctaattttgtcaggtacacagaagcaaactgcacaaccgaggttggc
tttgtgctctttgttgcgactggcctgggagtcctgttcttcatgctggtggtgttggtc
cataacctggccggcccctacctcctccccctctaccacatcacccttggctggctgtta
gaagccatgcgatccaacaccagggggcgctaccactacgatgcgtttgtctcctatagc
gggaaggacgagcgctgggtggtggaggagctgcttcccaatctggagcagaggggtcct
cctttcctgcgcctctgtctgcacagcagggacttccagctggggaaggacattgtggag
aacatcacagacagcctctaccggagccgccacactctctgcctagtcagccgtcactac
ctacgcagtaactggtgctctctggagatgaagctggccacctacaggctgcagctggag
caaagggacatcctcctcctggtcttcctggagaagatcccccctcgccggctttctgcc
caccacaggctggctcgcctgctgaaaaccaggacttatctggactggccccaggacccc
cttcagcaccaggcattctgggacagactgtgggctaaactgaaacctcagactgagctt
gagatcagaggttga
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