KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421604
Entry
139421604         CDS       T10872                                 
Name
(RefSeq) DNA polymerase delta catalytic subunit-like
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030  DNA replication
ocla03410  Base excision repair
ocla03420  Nucleotide excision repair
ocla03430  Mismatch repair
ocla03440  Homologous recombination
Brite
Enzymes [BR:ocla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     139421604
DNA replication proteins [BR:ocla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    139421604
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      139421604
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     139421604
SSDB
Other DBs
NCBI-GeneID: 139421604
NCBI-ProteinID: XP_071028760
LinkDB
Position
12:complement(90639496..90670547)
AA seq 1105 aa
MDAKRRNSGPPRGGASQAKRGKTGGDWEDSPSIFEEELALFEEADMEAEEREGQAGHDVI
PVGELFSTDLNPRWRRPQAAPLNPDSDTLVFQQIDLDYYLGAAVAGMPGQSQGNVPIIRM
FGVTGSGNSVCCHVHGFAPYFYIPAPNGFTSDHLSEFKRELNSAVLKDMRYNKDNMSVTV
LAVDITHKESMYGYHGKRIADFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSFSSYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYRVREERMLGETDAHNPGKVSLCQYEVDVGWTQLI
SHPAEGEYQRIAPLRVLSFDIECAGRKGIFPEAEKDPVIQIASMVQRQGEKEPFIRTVFT
LQSCSSIVGSQVLCFTKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKVK
LFPYLGRVLGIKSVLRDSSFQSKQMGRRENKILNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMPVVKPEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLTPEDFIKTPTGDLFVKSSVRKGLL
PDILEDLLSARKKAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTIANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGR
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDN
CTLVANLINSCLQTILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAA
KQAHVELAERMKKRDAGSAPQLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFATKRSACIGCR
AVLKDDAAVCDFCKKKESELYQKEIFHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQEKLVSRFGW
NT seq 3318 nt   +upstreamnt  +downstreamnt
atggatgctaaaaggcggaatagcggtccgccgaggggcggggcgtcccaggccaagcgt
ggtaaaactggcggggattgggaagacagcccgtcgatcttcgaggaggaactcgccctg
ttcgaagaagccgatatggaggcggaggagagggaaggacaggcggggcatgacgtcatc
cctgttggtgagctgttctctactgacctcaacccccgatggcgtcggccacaggccgcc
cctcttaacccggactctgacaccctggtcttccaacagattgacctcgactactattta
ggggctgctgtggctggcatgccaggtcagtctcaggggaatgtaccaataatccgcatg
tttggggtgactggcagcgggaacagtgtgtgctgccacgtgcacggctttgccccctat
ttctacatccctgcccccaatgggttcaccagtgatcacttgagtgagttcaaaagggag
cttaactctgctgtgctgaaggacatgcgctacaacaaggacaacatgtcggtcactgtg
ctggcggtggacatcacacacaaagaaagtatgtatggttaccatgggaaacggattgcg
gacttcctgcgcatcaccatggcaatgcctcgtctgattgccccggcgaagaggctcctg
gagcagggatttaagtttggacctttccccattcagagcttctcttcctacgaggctaac
atcgactttgagatcaggtttatggtggacagcgatgtggtgggttgctgctggattgag
ctgcccaaagggaagtaccgggtgagggaggagaggatgttgggggagacggacgctcac
aacccaggcaaggtgtctctgtgtcagtatgaggttgatgtgggatggacccagctgatc
agtcacccagcagagggagagtaccagaggatcgctcctctcagggttctcagctttgac
attgagtgtgctggaagaaaagggatttttcccgaggcagagaaagacccagtgatccag
atagcctccatggtgcagcgacagggagagaaggaacctttcatccgcaccgtcttcacc
ctccagtcctgctccagcatcgtgggctcccaggtcctgtgcttcactaaagagagccag
ttactacagagctgggctgagtttgtgaggacagtggatgcagacatcatcactgggtac
aacatccagaactttgaccttccctacctgctgaacagagcagctaccctgaaggtcaag
ctgttcccctacctgggcagagtactgggcatcaagtcagtcctgagagactccagtttc
cagagcaaacagatgggccgcagagagaacaagatcctcaacatggagggacgagttcag
tttgacctgctccaggtgctgctgagggactacaaactgcgctcgtacacactcaacgcc
gtcagcttccacttcctgcaagaacagaaggaggatgttcagcattctatcatcacagat
ctgcagaatggtaatgagcagacccggaggcgcctggcggtgtactgcctgaaggatgcc
tacctgcccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggcc
agagtcaccggggttcccctcacctacctgctctccagaggccagcagatcaaagtggtg
tcccagctactgcggcaggcaatgaaacaggggctggtcatgccagtggtgaagccggag
ggaggtgaagactacactggagctacagtcattgagccagagaaaggatactacagcgtc
cccatcgccaccctggatttctcctctctgtatccctccatcatgatggcccacaacctc
tgttacaccaccctgcttcagaagggctcagcggagaagctgggtctgaccccagaggac
ttcatcaagactcccacaggagacctgtttgttaagagctcggtgaggaagggacttctg
cctgatatcctggaggacctgctctctgccaggaagaaggccaaagcggagctgaaaaag
gaaacggatcctttcaagaaacaggtccttgacggtcgacagctcgctctcaaaatcagc
gccaactccgtctatggctttacaggggctcaggtgggcaagctgccctgccttgagatc
tcacagagtgttactgggtttggcagacagatgattgagcagaccaaacagctggtggaa
tccaagtacaccatcgccaacggttaccaagccgatgccaaggtcatctacggggacacg
gactccgtcatggtcaaactgggcgtggacactgtgagcagggccatggaggttgggagg
gaggcggcagagtgggtctcctcccacttcacccctcccatcaaactggagtttgagaag
gtgtactacccctacctgttgatcaacaagaagcgctacgcaggcctctacttctcctcc
agcgccgacactcacgacaagatggactgcaagggtatcgagacggtccgcagagacaac
tgtaccctggtggccaatctgatcaactcctgcctgcagaccattctgatagacagagat
ccgcagggtgcggtggcccacgccaaagaggtgatctctgacctgctgtgtaaccgcatc
gacatcagccagctggttatcaccaaggagctgacccgcacagcccaggagtacgctgcc
aagcaggcgcatgtggagctggccgagaggatgaagaagagagacgcgggtagcgccccc
caactgggagacagagttccctatgtcatcatcaaagctgccaaaggagtagcagcatac
atgaagtctgaggatccaatctatgttctggagaacaacattcccattgacacccagtac
tacctggaacaacagctctccaagccactgctccgcatctttgagcccatcctgggagag
agcaaagcagagagcgtcttactgaagggggatcacacgcgctgtaagacagtgttgacc
tccagggtgggggggctcatggccttcgccaccaagaggagcgcctgtatcggttgcaga
gcagtgctgaaggacgatgcggctgtgtgtgatttctgtaagaagaaggagtcggagctg
taccagaaagagatcttccacttaagtactctggaggagcgcttctctcgcctgtggaca
cagtgtcaacgctgtcagggctctctccatgaggatgtgctctgtaccagccgggactgt
cccatattctacatgaggaagaaggtgcagaaagatctggatgatcaggagaagctggtg
tctcgctttggatggtga

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