Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421689
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Entry
139421689 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1-like isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04137
Mitophagy - animal
ocla04144
Endocytosis
ocla04340
Hedgehog signaling pathway
ocla04350
TGF-beta signaling pathway
ocla04520
Adherens junction
Brite
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139421689
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139421689
Autophagy
Mitophagy
Other mitophagy associated proteins
139421689
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139421689
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
139421689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139421689
NCBI-ProteinID:
XP_071028884
LinkDB
All DBs
Position
12:complement(95196753..95248818)
Genome browser
AA seq
727 aa
AA seq
DB search
MSGPGSRRTGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISVWNHKKIHKRQGAGFLGCIRLLANSISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDGLGSGGPVVDCRGLLENDGPVFENCFSEEPLPYSDPTGA
AGGGTCPPDSPNQENRLQAQRIRGQDSQRHTHTPQNRPHGNQSPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPAGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQHSQVKDSSQPLGGGGGREMEVGGEEGGEGEVTLRYERDLVHKLKLLRHELS
LQQPQAGHCRIEVSRDEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYL
LCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHSHYINGGF
TLPFYKQLLGKPIMLQDLETTDPELHKSLVWILENDISSVLDHTFCVEHSAFGKFLQHEL
KPNGQNLPVTEDNKKEYVKLYVTWRFMRGIEAQFLALQKGFSQLIPQHLLKPFDHKELEL
IIGGLGKIDLADWKSNTRLKHCAVDSNVVCWFWEAVESFTEERRGRLLQFVTGSTRVPLQ
GFKALQGSTGSAGPRLFTIHLIEANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE
TCGFAVE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtcctgggtctcggaggaccgggtccagcatcaaaatccgcctgacagtctta
tgtgccaagaaccttgcaaagaaagacttcttccggttgccagacccatttgcaaaggta
gtggtggatggatcaggacagtgtcattctacagacacagtgaagagcactctggacccc
aaatggaaccaacactatgacctgtacatagggaagacagactccatcaccatcagtgtg
tggaaccataagaagatccacaagcggcagggcgccgggttcctgggctgtatacgactg
ctggctaactccatcagcagactgaaagacactggctaccagcggttggatctgtgtaag
ctgaatccatcagacagtgatgcagtacggggacagatcgtagtgagcctccagaccaga
gatggtttgggcagcggaggacccgtggtcgactgtagaggactgttagagaatgacggg
cctgtgtttgagaactgtttcagtgaggagccgctaccgtactcagaccccacgggcgcc
gctgggggcgggacctgtccaccggattcacccaaccaggagaaccggctccaggctcag
cgaatcagaggccaggattcccaaagacacacccacacccctcagaaccgaccgcatggc
aaccaatcacctgatctgcctgagggatacgagcagcgcaccacggtgcagggccaggtg
tattttcttcacacacagacgggagtcagcacctggcatgacccacgcatacccagggac
ctggccagtgtgagctgtgaggagttgggtccgctgccggccggttgggaggtgaggagc
acggtgtcgggacggatctactttgtggatcacaacaaccgaacaacgcagttcactgac
ccccggctacacaccatcatcagccaacactcccaggtgaaggactcgtctcagccgctg
ggtgggggaggcgggagagagatggaggtggggggggaggagggaggagaaggggaggtg
acactgcgttatgagagagacctggtccacaaactgaagctgctccgacacgagctgtca
ctacagcaaccacaggccggacactgtcgcatagaggtctcacgagacgagatctttgag
gagtcttatcgtcagatcatgaagatgagacccaaggatctgaagaaacgactgatggtg
aagtttagaggagaggaaggactggactacggaggagtggcaagggagtggctgtacctg
ctgtgccatgagatgttgaacccgtactacggcctgttccagtactcaacagacaacatt
tacactctacagatcaaccctgactcctctataaaccctgaccacctgtcgtatttccac
tttgtgggtcgtgtgatgggcctggcagtgttccatagtcactatatcaacggaggcttc
accctgcccttctacaagcagctgctggggaaacctattatgctacaagacctggagacc
actgatcctgaacttcacaagagtctggtctggatactggagaatgacatctcgtcggtt
ctagatcatacgttctgcgtggaacacagtgccttcgggaagttccttcaacatgagctg
aaacccaacggtcagaacctcccggtaaccgaggacaacaagaaggagtacgtgaagctt
tatgtcacctggaggtttatgagggggatcgaggctcagttcttagctctgcagaaagga
ttcagccaactgattcctcaacacctcctcaaaccatttgaccacaaggagctggagttg
ataatcggaggcctggggaagatagacctagcagattggaagtctaacacccgtttgaag
cactgtgctgtagacagtaatgtggtttgctggttctgggaggctgtagagagcttcact
gaggagaggagaggacgactactgcagtttgttaccggttctaccagagttccactacag
ggattcaaggcactacagggttctacaggttcagcaggcccaaggctgttcaccatccat
ctgatagaggccaacacagacaacctacccaaggcacacacatgttttaacagaatagat
atccctccctacgagtcgtacgagaaactttatgagaaactgctgacggccgtggaggaa
acttgcggcttcgctgtggagtga
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