Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421726
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Entry
139421726 CDS
T10872
Name
(RefSeq) NLR family CARD domain-containing protein 3-like isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139421726
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139421726
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
NOD2_WH
SPRY
LRR_6
PYRIN
LRR_4
Motif
Other DBs
NCBI-GeneID:
139421726
NCBI-ProteinID:
XP_071028941
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All DBs
Position
12:complement(98419340..98537893)
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AA seq
1073 aa
AA seq
DB search
MSLSGERDEGDPASKMRLSGEREGGPDTKAKRPIQQERPASPVPSCVSMKSDRSMEQPLQ
FRKGDFSLNQETNRRDQSEILSDQSSQSHQTDLASIFSMLEENIMTFVKNELKMFKRILS
PELPEGFESQKQDKEVVDAEDEKQESSAREGALKITLHVLRKMNQKELADTLEKYSDELA
VICQRELKSNLKKKFQCVFEGIAKQGNPTLLNKIYTELYITEGGTGEVNNEHELRQIETT
TRKQARPETAIKCNDIFKPLTGQDKPIRTVLTKGVAGIGKTVSVQKFILDWAEGKANQDV
QFVFSFPFRELNLMKEDKHTFIELLNHFSMETKQSGISIYNKYKVLFIFDGLDECRLPLD
FQKNKICWDVTESTSVDVLLTNLIKGNLLPSALLWITTRPAAANKIPSRCVDQVTEVRGF
NDPQKEEYFRKRFSDEDLASRIISHIKTSRSLHIMCHIPVFCWISATVLEHMLKQKREEM
PKTLTEMYTHLVVFHTKQKNEKYLGKEETGPHWNKESVLSLGKLAFQQLVKGNLIFYEED
LKEAGIDVNEASVCSGLCTQLFKEECVLYQDKVFCFVHLSIQEFLAAVYVFLSFINNNEN
LMDELQTNDEPEVTFYKSAVDKALQSETGNLDLFLRFLLGLSLESNQKHLRGLLTKTRSS
SQSHEETVKYIKEKIGEDLSPERSINLFHCLNELNDHSLVEEIQIYLSSGSLSIPNLSPA
QWSALVFVLLTSEKELDVFDLKKYSRSEEGLLRLLPVVKASRAVLLSGCGITEEGCASLV
SALRSNPSHLRELDLSNNDLKDSGVELLSAGLGNPHCKLETLRLSGCLVTEEGCASLVSA
LRSNPSHLRELDLSYNHPGDSGVRLLSAGLEDPHCRLEKLNVEHGGENTMKPGLRKYACD
LTLDLNTVNRRLSLSEENRKVTWRTEEQPYPHHPERFEDWEQVLCREGLTGRCYWEVEWS
GRGDEIGVTYKGISRRGRGKDCCLGCNDKSWSLYCCDNRYIAWHNNISSTLDVHPSSSHR
VGVYLDWPSGTLSFYRASSDTLTHLITFTSTFTEPLYPGFRVWWDGDSVSLCQ
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctggggagagagatgagggggaccctgcctcaaaaatgagactctctggg
gagagagagggaggacctgacaccaaagctaagagaccaatccagcaggagagaccagcc
tcccctgttcccagctgtgtgtccatgaagagtgaccggtctatggagcaacctttacag
tttagaaagggagacttttcactgaaccaagaaaccaacaggagagatcagtcagagatt
ctcagtgatcagtcttcccagagtcatcaaacagacctggcctccatattcagtatgctt
gaagagaatattatgacatttgtgaagaacgagctgaagatgttcaagaggattcttagt
ccagaactcccagaaggctttgagagtcagaagcaggataaggaagtggtggatgctgaa
gatgagaagcaggagagcagtgccagagagggggctctgaagatcacactgcacgtcctg
aggaaaatgaaccagaaggagcttgctgacacactggagaaatattcagatgagctcgct
gtgatttgccaacgtgaactcaaatctaatctaaagaagaagtttcaatgtgtatttgag
gggatcgctaaacaaggaaacccaacacttctcaataagatctacacagagctctacatc
acagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaaca
accaggaaacaagcaagaccagagactgcaatcaaatgtaacgacatcttcaaaccctta
actggacaagacaaacctatcagaactgtgctgacaaagggagtcgctggcattggaaaa
acagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtc
caatttgtattttcattcccttttcgggagctgaatttgatgaaagaggacaaacacact
ttcattgaacttcttaatcacttctcaatggaaaccaaacaatcaggaatctccatctac
aacaagtacaaagttctgttcatctttgatggtctggatgagtgccgactgcccctagac
ttccagaagaacaagatctgttgggacgtcacagagtcaacctcagtggatgttctgctg
acaaatctcatcaagggaaatctgcttccctctgctctcctctggataactacccgacct
gcagcagccaataagatcccttcacggtgtgttgaccaggtaacagaggtacgagggttc
aatgacccacagaaggaggagtacttcaggaagagattcagtgatgaggacctggccagc
agaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtc
ttctgttggatttctgcaacagtccttgaacacatgctgaaacagaagagagaagagatg
cccaagactctgactgagatgtacacacaccttgtggtgtttcataccaaacagaagaat
gaaaagtatcttgggaaagaagagacaggtccacactggaataaagagagcgttctgtca
ctgggaaaactggcttttcaacagcttgtgaagggcaatctgattttctatgaagaagac
ctgaaagaggctggcattgacgtcaatgaagcctcagtgtgctcaggattgtgcacacag
ctctttaaagaggaatgtgtgctgtaccaggacaaggtgttctgctttgttcatctgagc
attcaggagtttctggctgctgtatatgtgttcctctcattcatcaacaacaatgagaat
ctaatggatgaactgcaaacaaacgacgagcctgaagttactttctacaagagtgctgtg
gataaagccttacaaagtgagacaggaaacctggaccttttcctccgcttccttctgggc
ctctcactggagtccaatcagaagcacttacgaggtctactgacaaagacaagaagcagc
tcacagagccatgaagaaacagtcaagtacatcaaggagaagatcggggaggatctctct
ccagagaggagcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtg
gaggagatccaaatatacctgagctcaggaagtctctcaatacccaacctgtcacctgca
cagtggtcagctctggtctttgtgttgctgacttcagaaaaagagctggatgtgtttgac
ctgaagaaatactccagatcagaggaaggtcttctgaggctgctgccagtggtcaaagcc
tccagagctgttctgctgtcaggctgtggaatcacagaggaaggctgtgcttctctggtc
tcagctctgaggtcaaacccctcacacctgagagagctggacctgagtaacaatgacctg
aaggattcaggagtggagctgctctctgctggactggggaatccccactgtaaactggag
actctgaggctgtcaggatgtctagtcacagaggaaggctgtgcttctctggtctcagct
ctgaggtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagac
tcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactc
aatgtggaacatggtggagagaacacaatgaaacctggacttagaaaatatgcctgtgat
ctcacactggacctaaacacagtaaacagacgcctctctctgtctgaggagaacagaaag
gtgacatggaggacagaggagcagccgtatcctcatcacccagagagatttgaggactgg
gaacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggtagagtggagt
gggagaggggatgaaataggagtgacatataaaggaatcagcaggagaggaaggggtaag
gactgttgtcttggatgtaatgacaagtcctggagcctgtactgctgtgacaaccgttac
attgcctggcacaataacatttcctctaccttagacgtccacccctccagctcccacaga
gtaggagtgtatctggactggccatccggcactctgtccttctatagagcctcctctgac
acactgacccacctgatcacattcacctccacattcactgagcccctctatccagggttc
agggtttggtgggatggtgactcagtgtccctctgtcagtga
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