Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421752
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Entry
139421752 CDS
T10872
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139421752
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139421752
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
NOD2_WH
SPRY
LRR_6
LRR_4
PYRIN
Motif
Other DBs
NCBI-GeneID:
139421752
NCBI-ProteinID:
XP_071028973
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All DBs
Position
12:100733430..101815464
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AA seq
1103 aa
AA seq
DB search
MSLSGEREEGPASKMSLSGEHDTKTKSPIKQERPASPVPSCVSMKSDWSMGQPINFKEGD
VSTEQSPIKQERPASPVPSCVSMKSDCSMEPPLNFRKGDFSTEQRNQQERSESEILSGQS
SQSHQTDLASIFSLLEEKIMTFVKNEMKMFKRILSPELPEGFESQKQDKEVVDPEDEKQE
SSAREGALKITLHVLRKMNQKELADTLEKYELAVICQRELKSNLKKKFQCVFEGIAQQGN
PTLLNKIYTELYITEGGTGEVNNEHELRQIETTTRKQARPETAIKCNDIFKPLTGQGKPI
RTVLTKGVAGIGKTVSVQKFILDWAEGKANQDVQFVFSFPFRELNLMKGEKQTFIELLNH
FSMETKQSRISNYDKYKVLFIFDGLDECRLPLDFQKNKICCDVTESTSVDVLLTNLFKGN
LLPSALLWITTRPAAANKIPSRCVDQVTEVRGFNDPQKEEYFRKRFSDEDLASRIISHIK
TSRSLHIMCHIPVFCWISATVLEHMLKHKREEMPKTLTEMYTHLVEFHTKQKNEKYLGKE
ETGPHWNKESILSLGKLAFQQLVKGNLIFYEEDLKEAGIDVNEASVYSGLCTQIFKEECG
LYQDKVYYFVHLSIQEFLAAVYVFLSFINNNENLMDKLQTNDEPEVTFYKSAVDKALQSE
TGNLDLFLRFLLGLSLESNQKHLRGLLTKTRSSSQSHEETVKYIKEKIRKNPSPERSINL
FHCLNELNDHSLVEEIQSYLRSGSLSRANLSPAQWSALVFVLLTSEKELDVFDLKKYSRS
EEGLLRLLPVVKASRAALLSGCRVTEEGCASLVSALRSNPSHLRELDLSNNDLKDSGVKL
LSAGLGNPHCKLETLRLSGCLVTEEGCASLVSALRSNPSHLRELDLSYNHPGDSGVRLLS
AGLEDPHCRLEKLNVEHGGENRMKPGLRKYACGLTLDPNTVNRLLSLSEENRKVTCRREE
QPYPYHPERFEDCGQVLCREGLTGRCYWEVEWSGRRAVIGVTYKGISRRREVNDCWLGYN
DKSWTLFCSDNSYIAWHNNKPTTIDLHPSSSHRVGVYLDWPAGTLSFYRASSDTLTHLIT
FTSTFTEPLYPGFWVDYNSSVSL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctggggagagagaggagggacctgcctctaaaatgagtctctctggggaa
catgacaccaaaactaagagtccaatcaagcaggagagaccagcctcccctgttcccagc
tgtgtgtccatgaagagtgactggtctatgggtcaacctataaactttaaagagggagac
gtttctactgaacaaagtccaatcaagcaggagagaccagcctcccctgttcccagctgt
gtgtccatgaagagtgactgttctatggaacctcctctcaactttagaaagggagacttt
tctactgaacaaagaaaccaacaggagagatcagagtcagagattctcagtggtcagtct
tcccagagtcatcaaacagacctggcctccatattcagtttgcttgaagagaaaattatg
acatttgtgaagaacgagatgaagatgttcaagaggattcttagtccagaactcccagaa
ggctttgagagtcagaagcaggataaggaagtggtggaccctgaagatgagaagcaggag
agcagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccag
aaggagcttgctgacacactggagaaatatgagctcgctgtgatttgccaacgtgaactc
aaatctaatctaaagaagaagtttcaatgtgtatttgagggaatcgctcaacaaggaaac
ccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagag
gtcaataatgaacatgagctgagacagattgagacaacgaccaggaaacaagcaagacca
gagactgcaattaaatgtaatgacatcttcaaacccttaactggacaaggcaaacctatc
agaactgtgctgacaaaaggagtcgctggcattggaaaaacagtctctgtgcagaagttc
attctggactgggctgaaggaaaagcaaatcaggatgtccaatttgtattttcattccct
tttcgggagctgaatttgatgaaaggggaaaaacaaactttcattgaacttcttaatcac
ttctcaatggaaaccaaacaatcaagaatctccaactacgacaagtacaaagttctgttc
atctttgatggtctggatgagtgccgactgccactagacttccagaagaacaagatctgt
tgtgacgtcacagagtcaacctcagtggatgttctgctgacaaatctcttcaagggaaat
ctgcttccctctgctctcctctggataactacccgacctgcagcagccaataagatccct
tcaaggtgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggag
tacttcaggaagagattcagtgatgaggacctggccagcagaatcatctcacacataaag
acatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttctgcaaca
gtccttgaacacatgctgaaacataagagagaagagatgcccaagactctgactgagatg
tacacacaccttgtggagtttcataccaaacagaagaatgaaaagtatcttgggaaagaa
gagacaggtccacactggaataaagagagcattctgtcactgggaaaactggcttttcaa
cagcttgtgaagggcaatctgattttctatgaagaagacctgaaagaggctggaattgat
gtcaatgaagcctcagtgtactcaggattgtgcacacagatctttaaagaggaatgtggg
ctgtaccaggacaaggtgtactactttgttcatctgagcattcaggagtttctggctgct
gtatatgtgttcctctcattcatcaacaacaatgaaaatctaatggacaaactgcaaaca
aacgacgagcctgaagttactttctacaagagtgctgtggataaagccttacaaagtgag
acaggaaacctggaccttttcctccgcttccttctgggcctctcactggagtccaatcag
aagcacttacgaggtctacttacaaagacaagaagcagctcacagagccatgaagaaaca
gtcaagtacatcaaggagaagatcaggaagaatccctctccagagaggagcatcaatctg
ttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaagctacctg
agatcaggaagtctctctagagccaacctgtcacctgcacagtggtcagctctggtcttt
gtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatca
gaggaaggtcttctgaggctgctgccagtggtcaaagcctccagagctgctctgttgtca
ggctgtcgagtcacagaggaaggctgtgcttctctggtctcagctctgaggtcaaacccc
tcacacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtgaagctg
ctctctgctggactggggaatccccactgtaaactggagactctgaggctgtcaggctgt
ctagtcacagaggaaggctgtgcttctctggtctcagctctgaggtcaaacccctcacac
ctgagagagctggacctgagctataatcacccaggagactcaggagtcagactgctctct
gctggactggaggatccacactgcagactggagaaactcaatgtggaacatggtggagag
aacagaatgaaacctgggcttagaaaatatgcctgtggtctcacactggacccaaacaca
gtaaacagactcctctctctgtctgaggagaacagaaaggtgacatgtaggagagaggag
cagccgtatccttatcacccagagagatttgaggactgtggacaggtgctgtgtagagag
ggtctgactgggcgctgttactgggaggtagagtggagtgggagaagggctgttattgga
gtgacatataaaggaatcagcaggagacgagaggttaacgactgttggcttggatacaat
gacaagtcctggactctgttctgctctgacaacagctacattgcctggcacaataataaa
cccactaccatagacctccacccctccagctcccacagagtaggagtgtatctggactgg
ccagccggcactctgtccttctatagagcctcctctgacacactgacccacctgatcaca
ttcacctccacattcactgagcccctctatccagggttttgggttgattacaactcctca
gtgtccctgtaa
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