Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421754
Help
Entry
139421754 CDS
T10872
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139421754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139421754
NCBI-ProteinID:
XP_071028975
LinkDB
All DBs
Position
12:100419255..100447971
Genome browser
AA seq
1073 aa
AA seq
DB search
MSLSGEREEGVPASKMSLSGELDTKAKSPIKQERPASPVPSCVSMKSDKSMGQPLNFREG
DFSTEQRNQQERSESEILSGQSSQSHQTDLASIFSLLEEKIMTFVKNELKTFKRILSPEL
PEGFESKKQDKEVVDAENEKQESSAREGALKITLHILRKMNQKELADTLEKNSDELAVIC
QRELKSNLKKKFQCVFEGIAKQGNPTLLNKIYTELYITEGGTGEVNNEHELRQIETTTRK
QARPETAIKCNDIFKPLTGQDKLIRTVLTKGVAGIGKTVSVQKFILDWAEGKANQDVQFV
FSFPFRELNLMKGDKHTFIELLNHFSMETKQSRISNYNKYKVLFIFDGLDECRLPLDFQK
NKICCDVTESTSVDVLLTNLIKGNLLSSALLWITTRPAAANKIPSVCVDQVTEVRGFNDP
QKEEYFRKRFSAEDLASRIISHVKTSRSLHIMCHIPVFCWISATVLEHMLEHKLEEMPKT
LTEMYTHLVVFHTKQKNEKYLGKEETGPHWNEESILSLGKLAFQQLVNGNLIFYEEDLKE
AGIDVIEASVYSGLCTQLFKEECGLYQDKVYCFVHLSIQEFLAAVYVFLNNNENLMDKPR
TKDEPAVTFYKSAVDKALQSETGNLDLFLRFLLGLSMESNQKHLRGLLTKTRSSSQSHEE
TVKYIKEKIRENPSPERCINLFHCLNELNDHSLVEEIQSYLSSGSLSERNLSPGQWSALV
FVLLTSEKELDVFDLKKYSRSEEGLLRLLPVVKASRAALLSGCGFTEEGCSSLVSALMSN
PSHLRELDLSNNDLKDSGVKLLSAGLGNPHCKLETMRLSRCLVTEEGCASLVSALRSNPS
HLRELDLSYNHPGDSGVRLLSARLEDPHCRLEKLNVEHGGEYTMKPGLRKYVCDLTLDPN
TVNRLLSLSEENRKVTRRREKHPYPDHPERFEDWYQVLCREGLTGRCYWEVERSGSGADI
GVTYKGISRRGEDDDSRIGYNDKSWSLFCSDNRYTARHNNIHIDVPSSSSHRVGVYLDWP
AGTLSFYRVSSDTLTHLYTFTSTFTEPLYPGFRVWYDDSSVSLCQVVPVSNTK
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctggggagagagaggagggggtccctgcctctaaaatgagtctctctggg
gaacttgacaccaaagctaagagcccaatcaagcaggagagaccagcctcccctgttccc
agctgtgtgtccatgaagagtgacaagtctatgggtcaacctttaaactttagagaggga
gacttttctactgaacaaagaaaccaacaggagagatcagagtcagagattctcagtggt
cagtcttcccagagtcatcaaacagacctggcctccatattcagtttgcttgaagagaaa
attatgacatttgtgaagaacgagctgaagacgttcaagaggattcttagtccagaactc
ccagaaggctttgagagtaagaagcaggataaggaagtggtggacgctgaaaatgagaag
caggagagcagtgccagagagggggctctgaagatcacactgcacatcctgaggaaaatg
aaccagaaggagcttgctgacacactggagaaaaattcagatgagcttgctgtgatttgc
caacgtgaactcaaatctaatctaaagaagaagtttcaatgtgtatttgaggggatcgct
aaacaaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggt
ggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaa
caagcaagaccagagactgcaatcaaatgtaacgacatcttcaaacccttaactggacaa
gacaaacttatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctct
gtgcagaagttcatcctggactgggctgaaggaaaagcaaatcaggatgtccaatttgta
ttttcattccctttccgggagctgaatttgatgaaaggggacaaacacactttcattgaa
cttctcaatcacttctcaatggaaaccaaacaatcaagaatctccaactacaacaagtac
aaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaag
aacaagatctgttgtgacgtcacagagtcaacctctgtggatgttctgctgacaaatctc
atcaagggaaatctgctttcctctgctctcctctggataactacccgacctgcagcagcc
aataagatcccttcagtgtgtgttgaccaggttacagaggtacgagggttcaatgaccca
cagaaggaggagtacttcaggaagagattcagtgctgaggacctggccagcagaatcatc
tcacacgtaaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttgg
atttctgcaacagtccttgaacacatgctggaacataagttagaagagatgcccaagact
ctgactgagatgtacacacaccttgttgtgtttcataccaaacagaagaatgaaaagtat
cttgggaaagaagagacaggtccacactggaatgaagagagcattctgtcactgggaaaa
ctggcttttcaacagcttgtgaatggcaatctgattttctatgaagaagacctgaaagag
gctggcattgatgtgattgaagcctcagtgtactcaggattgtgcacacagctctttaaa
gaggaatgtgggctgtaccaggacaaggtgtactgctttgttcatctgagcattcaggag
tttctggctgctgtatatgtgttcctcaacaacaatgagaatctaatggacaaaccgcga
acaaaagacgagcctgcagttactttctacaagagtgctgtggataaagccttacaaagt
gagacaggaaacctggaccttttcctccgcttccttctgggcctctcaatggagtccaat
cagaagcacttacgaggtctactgacaaagacaagaagcagctcacagagccatgaagaa
acagtcaagtacatcaaggagaagatcagggagaatccctctccagagaggtgcatcaat
ctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaagctac
ctgagctcaggaagtctctcagaacgcaacctgtcacctggacagtggtcagctctggtc
tttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccaga
tcagaggaaggtcttttgaggctgctgccagtggtcaaagcctccagagctgctctgctg
tcaggctgtggattcacagaggaaggctgttcttctctggtctcagctctgatgtcaaac
ccctcacacctgagagagttggatctgagtaacaatgacctgaaggattcaggagtgaag
ctgctctctgctggactggggaatccccactgtaaactggagactatgaggctgtcacgc
tgtctagtcacagaggaaggctgtgcctctctggtctcagctctgaggtcaaacccctca
cacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctc
tctgctagactggaggatccacactgcagactggagaaactcaatgtggagcatggtgga
gagtacacaatgaaacctgggcttagaaaatatgtctgtgatctcacactggacccaaac
acagtaaacagactcctctctctgtctgaggagaacagaaaggtgacacgtaggagagag
aagcatccgtatcctgatcacccagagagatttgaggactggtaccaggtgctgtgtaga
gagggtctgactgggcgctgttactgggaggtagagaggagtgggagtggggctgatata
ggagtgacatataaaggaatcagcaggagaggagaggatgatgacagtaggattggatac
aatgacaagtcctggagtctgttctgctctgacaaccgttacactgccaggcacaataat
attcacatagacgtcccctcctccagctcccacagagtaggagtgtatctggactggcca
gccggcactctgtccttctatagagtctcctctgacacactgacccacctgtacacattc
acctccacattcactgagcccctctatccagggtttagggtttggtatgatgactcctca
gtgtccttgtgtcaggtggtccctgtgtcaaacacaaaatga
DBGET
integrated database retrieval system
