Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421760
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Entry
139421760 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139421760
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139421760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
WHD_NOD2
PRY
SPRY
LRR_6
PYRIN
LRR_4
IcmW
DUF7639
Motif
Other DBs
NCBI-GeneID:
139421760
NCBI-ProteinID:
XP_071028980
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All DBs
Position
12:99971056..99991465
Genome browser
AA seq
1085 aa
AA seq
DB search
MSLSGEREEGGPASKMSLSGEHDTKAKSPNKRKRPASPVPSCVSMKSDWSMDHSIVFREG
DFSTEQRNQQEGSESEILSGQSSQSHQTDLASIFSLLEENIMTFLKNELKMFKRILSPEL
PEGFESQKQDKEVVDAEDEKQESSAREGALKITLHILRKMNQKELADTLEKXSDELAVIC
HRELKSNLKKKFQCVFEGIAKQGNPTLLNKFYTELYITEGGTGEVNNEHELRQIETTTRK
QARPETAIKCNDIFKPLTGQDKRIRTVLTKGVAGIGKTVSVQKFILDWAEGKANQDVQFV
FSFPFRELNLMKGDKHTFIELLNHFSMETKQSGISNYDKYKVLFIFDGLDECRLPLDFQK
NKICCDVTESTSVDVLLTNLIKGNLLPSALLWITTRPAAANKIPSGCVDQVTEVRGFDDP
QKEEYFRKRFSDEDLAIRIISHIKTSRSLHIMCHIPVFCWISATVLEHMLKHQREEMPKT
LTEMYTHIVVFHTKQNNEKYLGKEETGPHWNKKSILSLGKLAFQQLVNGNLIFYEEDLRE
AGIDVNEASVYSGLCTQLFKEECGLYQVKVYCFVHLSIQEFLAAVYVFLSFINNNENLMD
KLQTKSSNFSLLFRDKPEVTVYKSAVDKALQSETGNLDLFLRFLLGLSMESNQKHLRGLL
TKTRSSSQSHEETVKYIKEKIRDNPSPERSINLFHCLNELNDHSLVEEIQSYLRSGSLSR
AGLSPVQWSALVFVLLTSEKELDVFDLKKYSRSEEGLLRLLPVVKASRAVLLSGCGVTEE
GCASLVSALESNPSHLRELDLSNNDLKDSGVKLLSAGLGNPHCKLETLRLSGCLVTEEGC
ASLVSALRSNPSHLRELDLSYNHPGDSGLRLLSAGLEDPHCRLEKLNVEHGGENRMKPGL
RKYVCDLTLDLNTVNRHLSLSEGNRKVTWRREEQPYPDHPGRFEDCEQVLCREGLTGRCY
WEVEWSGRRADIGVTYKGINRRGRVEDCGLGYNDKSWSLDCSDYSYIACHNNNDTTIDVP
SSSSHRVGVYLDWPDGTLSFYRASSDTLTHLHTFTSTFTEPLYPGFRVHDDTSVSLCQVV
PVSNT
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctggggagagagaggaggggggccctgcctctaaaatgagtctctctggg
gaacatgacaccaaagcgaagagcccaaacaagcggaagagaccagcctcccctgtaccc
agctgtgtgtccatgaagagtgactggtctatggatcattctatagtgtttagagaggga
gacttttctactgaacaaagaaaccaacaggagggatcagagtcagagattctcagtggt
cagtcttcccagagtcatcaaacagacctggcctccatattcagtttgcttgaagagaat
attatgacatttttgaagaacgagctgaagatgttcaagaggattcttagtccagaactc
ccagaaggctttgagagtcagaagcaggataaggaagtggtggacgctgaagatgagaag
caggagagcagtgccagagagggggctctgaagatcacactgcacatcctgaggaaaatg
aaccagaaggagcttgctgacacactggagaaatagtcagatgagcttgctgtgatttgc
caccgtgaactcaaatctaatctaaagaagaagtttcaatgtgtatttgaggggatcgct
aaacaaggaaacccaacacttctcaataagttctacacagagctctacatcacagagggt
ggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaa
caagcaagaccagagactgcaatcaaatgtaatgacatcttcaaacccttaactggacaa
gacaaacgtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctct
gtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtccaatttgta
ttttcattccctttccgggagctgaatttgatgaaaggtgacaaacacactttcattgaa
cttcttaatcacttctcaatggaaaccaaacaatcaggaatctccaactacgacaagtac
aaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaag
aacaagatctgttgtgacgtcacagagtcaacctcagtggatgttctgctgacaaatctc
atcaagggaaatctgcttccctctgctctcctctggataactacccgacctgcagcagcc
aataagatcccttcagggtgtgttgaccaggtgacagaggtacgagggtttgatgaccca
cagaaggaggaatacttcaggaagagattcagtgatgaggacctggccatcagaatcatc
tcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttgg
atttctgcaacagtccttgaacacatgctgaaacatcagagagaagagatgcccaagact
ctgactgagatgtacacacacattgtggtgtttcataccaaacagaataatgaaaagtat
cttgggaaagaagagacaggtccacactggaataaaaagagcattctgtcacttggaaaa
ctggcttttcaacagcttgtgaatggcaatctgattttctatgaagaagaccttagggaa
gctggcattgatgtcaatgaagcctcagtgtactcaggattgtgcacacagctctttaaa
gaggaatgtgggctgtaccaggtcaaggtgtactgctttgttcatctgagcattcaggag
tttctggctgctgtatatgtgttcctctcattcatcaacaacaatgagaatctaatggac
aaactacaaacaaagtcgagtaacttttctttgctgttcagagacaagcctgaagttact
gtctacaagagtgctgtggataaagccttacaaagtgagacaggaaacctggacctgttc
ctccgcttccttctgggcctctcaatggagtccaatcagaagcacttacgaggtctactg
acaaagacaagaagcagctcacagagccatgaagaaacagtcaagtacatcaaggagaag
atcagggacaatccctctccagagaggagcatcaatctgttccactgtctgaatgaactg
aatgaccattctctagtggaggagatccaaagctacctgagatcaggaagtctctctaga
gccggcctatcacctgtacagtggtcagctctggtctttgtgttgctgacttcagaaaag
gagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttctgaggctg
ctgccagtggtcaaagcctccagagctgttctgctgtcaggctgtggagtcacagaggaa
ggctgtgcttctctggtctcagctctagagtcaaacccttcacacctgagagagctggac
ctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactcgggaat
ccccactgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggctgt
gcttctctggtctcagctctgaggtcaaacccctcacacctgagagagctggacctgagc
tacaatcacccaggagactcaggactcagactgctctctgctggactggaggatccacac
tgcagactggagaaactcaatgtggaacatggtggagagaacagaatgaaacctgggctt
agaaaatatgtctgtgatctcacactggacctaaacacagtaaacagacacctctctctg
tctgaggggaacagaaaggtgacatggaggagagaggagcagccgtatcctgatcaccca
gggagatttgaggactgtgaacaggtgctgtgtagagagggtctgactgggcgctgttac
tgggaggtagagtggagtgggagaagggctgatataggagtgacatataaaggaatcaac
aggagaggaagggttgaggactgtggtcttggatacaatgacaagtcttggagtctggac
tgctctgactacagttatattgcctgtcacaataataatgacactaccatagacgtcccc
tcctccagctcccacagagtaggagtgtatctggactggccagacggcactctgtccttc
tatagagcctcctctgacacactgacccacctgcacacattcacctccacgttcactgag
cccctctatccagggtttagggttcatgatgatacctcagtgtccctgtgtcaggtggtc
cctgtctcaaacacatga
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