Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421880
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Entry
139421880 CDS
T10872
Name
(RefSeq) integrin alpha-2-like
KO
K06481
integrin alpha 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03271
Virion - Rotavirus
ocla04145
Phagosome
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
139421880
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139421880
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139421880
09144 Cellular community - eukaryotes
04510 Focal adhesion
139421880
09142 Cell motility
04820 Cytoskeleton in muscle cells
139421880
04810 Regulation of actin cytoskeleton
139421880
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139421880
04515 Cell adhesion molecules [BR:
ocla04515
]
139421880
04090 CD molecules [BR:
ocla04090
]
139421880
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139421880
Exosomal proteins of bladder cancer cells
139421880
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139421880
CD molecules [BR:
ocla04090
]
Proteins
139421880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_3
Integrin_A_Ig_1
VWA_2
FG-GAP_3
FG-GAP_2
ITGAX-like_Ig_3
FN3_IL27B_N
Integrin_alpha
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
139421880
NCBI-ProteinID:
XP_071029109
LinkDB
All DBs
Position
12:complement(14954998..14998489)
Genome browser
AA seq
1189 aa
AA seq
DB search
MEFNRKRTVLTLIFIQCWNVPGSLSFNVGTAGAKVFSEPSVEEFGYTVQQFRNHQGKWLL
VGSPWSGYNQDRKGDVYKCEIRGASSGCQRLNLQNSVSISTVSNVNVNMSLGLTLTRTAT
ADTFMTCGPLWAQKCGSQYYYPGICAEVSPLFNPLSSFSPALQTCGGPMDIAIVLDGSNS
IYPWPPVVAFLKKLLENLDIGPDNTQVSIIQYAVDPDFEFYLNSYKTKDSIIAAAANIPQ
KSGLETNTFRAIEFARRQAFLLTNGARPGASKVMVVVTDGESHDKGLKDDVIGKCEQEKI
TRFGIAVLGYYIRNDIDTKNLIAEIKSIASTPTDRYFFNVSAEEALLEIAGTLGDRIFNI
EGTGKGGDFQMEMSQVGFSAHQTKKQNMMMLGAVGAYGWSGTVVHYTPQKSDIFPKTAFE
NILEDRNHSSLLGYSVTTLNDGSTEYYVAGAPRSNHTGQVIVYIINSKGQPTVIDSQRGD
QIGSYYGSVLCPLDVDKDGVSDILLVGAPMFMNEQKKETGKVYLLSFTKGILSDQGILRG
PSPADNARFGMSISAVPDLNMDGYSDVVVGAPLEDNNRGVIYVFNGDKKKLRTQCSQRIL
GSKLDPALKYFGRSLDANSDLNDDTIPDVSVGAYGKVVQLWSRGLAVVTARATFNPDKVN
ILSKTCRVSGRLVSCFNTTVCFSATFRPKIPVGPVALRYNLTLDADLQSSRVTSRGQFSN
SERVLQKDIRVSTRELCDTYEVFVQEAPDFVSSIGLRVDIALHDPDSSPVLDVLRPTSWE
FFIPFSKDCGSDELCESDLLLNVKKGEMIPSSSKMLVSFKNKRLSFTVSVTNKKENAYNT
RVMATYSKNLFYASITPPSDETEVKCSSTRETRSLSCQVGYPALRKNQEVTFVINFDFNL
NQLQTEADVSFEALSDSTEVNPSDNHASISIPVHYDSEIALSREANLNFYVVDMDNEVKT
TVNTFNDIGPELKFSLKVSTGNFPVNIAYLTVSLPSDTAGGNPLLYVTGVNTAPAGDVSC
EVASLVNPLKISEKPYTPSFSKENLMSTEELNCKTAKCQPMKCVLKDMGMMSDFFVNVTT
RIWNGTFAASSFQSTVLTVSTEIETSQPELLVISHKHLTVGVTISKPGVKGEIPVGVIVG
SVIGGLLLLALVIGLLWKFGFFRRKYQQLMKNTDEDQAETEGLQENAAA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaatcgaaagaggactgttttaacgctgattttcatccaatgttggaacgtg
cccgggtccttatcctttaatgtgggaactgctggagccaaagtattctctgaaccttct
gtagaggagtttggatacactgtgcaacagttcaggaatcaccagggcaaatggttgctg
gttggttctccctggagtggatacaaccaggacaggaaaggagacgtctacaagtgtgag
atcagaggggccagttcaggatgtcagagactcaacctgcaaaactcagtcagcatatca
acagtgagtaatgtcaatgtcaacatgagcctggggctgaccctaacccgtacagctaca
gcagatacatttatgacatgtggacctctgtgggctcagaaatgtggcagtcaatattac
tacccagggatctgtgcagaagtcagccctctcttcaaccccctgtcttccttctcacct
gcccttcagacttgtgggggtcccatggatattgctattgtcttggatggctctaacagt
atatatccctggccaccagttgtggctttcctcaagaaactgttggagaacttggatatt
ggacctgacaatactcaggtaagtattatacagtacgcggttgatccggattttgaattc
tatctgaactcttacaaaaccaaagactcaatcattgcggccgcagcgaacataccccag
aagtcaggcctggagactaacaccttccgggccattgaatttgccagacggcaggcgttc
ctgcttacgaacggtgcccgacctggagccagcaaggtgatggtggtggtgacggatgga
gagtctcacgacaagggcctcaaagacgacgtcatcgggaagtgtgagcaggagaagatc
acccggtttggtattgctgtcctcgggtattacataaggaatgacatcgacactaaaaac
ctgattgctgagatcaagtccatcgccagtaccccgacagacaggtacttctttaatgtg
tcagctgaggaagctctgcttgagatcgctggaactctgggagacagaatcttcaatata
gagggtactgggaaagggggtgattttcagatggagatgtcccaagtgggcttcagtgcc
caccaaaccaagaagcagaatatgatgatgctgggtgcagtgggggcctatggctggagt
ggtactgtggttcactacactcctcagaaatcagacatcttccccaagacggccttcgag
aacattctagaggacagaaaccacagttcacttttaggctactctgtgacaacgctgaat
gatggcagcacggagtactacgtggctggcgctcctcggtccaaccacactggacaggtc
atagtgtacatcatcaacagcaaaggacaacccactgtcatagactcccagagaggagat
cagataggctcctactatggcagtgtactctgtcctctggatgtggataaagatggtgtg
tctgatatactgctggtcggcgctcccatgttcatgaatgaacagaagaaggagactggg
aaggtctatctcctctctttcaccaagggcatcctaagtgaccaggggatcctgaggggt
ccgtccccggcggacaacgctcgttttgggatgtccatctcagcggtgcctgacctcaac
atggatggttacagtgatgtagtggtgggagccccgctggaagacaacaacaggggggtc
atttatgtcttcaacggggacaagaagaaactgaggacacagtgttctcagagaatcctg
ggctccaagctggaccctgcattgaagtattttgggcggtccctagacgccaactctgac
ctaaacgatgacaccatcccagatgtatctgtgggggcttatgggaaggtggtccagctc
tggtctcgaggtctggccgtggtgacagcgagggcgacctttaaccctgacaaggtcaac
atcctgagtaagacgtgcagggtcagtgggaggctggtgtcctgcttcaataccactgtc
tgtttcagtgcaaccttcaggcccaagatacctgtaggacctgtggctctcaggtacaac
ctgaccctggatgctgatctccagtcgtctcgtgtcacctccagaggtcagttcagtaac
tcggagagagtcctgcagaaagacatccgggtttccaccagggagctctgtgacacctat
gaggtttttgttcaggaggcccctgactttgtgagctccatcggtctgcgtgtggacatc
gctctgcatgacccagactccagtcctgttctagatgtcctccgtcctacttcatgggag
ttctttatcccattctccaaagactgtggctctgatgagctgtgtgagagtgacctgctc
ttgaacgtcaagaaaggagagatgattcccagctcatctaagatgttggtcagctttaag
aacaagaggctgtccttcactgtgtctgtgaccaacaagaaggagaatgcgtacaacacc
cgagtcatggccacatactccaaaaacctcttctacgcctccatcactcctccaagtgat
gaaacagaggtgaagtgtagctccacccgagagactcgcagcctctcgtgccaggtggga
tacccagctttaaggaagaaccaggaggtgacattcgtaatcaactttgacttcaacctg
aatcaactgcagaccgaagccgacgtgagctttgaagctctaagtgacagcacagaggtg
aacccctcagacaaccacgcctctatctccatccctgtccactatgattcagagatcgct
ctctccagggaagcaaatctcaatttctacgtggttgacatggacaatgaggtgaagacc
acagtgaatactttcaatgacatcggtcctgagttaaaattctctctgaaggtttctaca
gggaatttcccagtgaatattgcctacctcacagtctcactgcccagcgatacagcagga
ggcaacccattactgtatgtgacaggagtcaacactgcacctgctggagatgttagctgt
gaagtagccagcctcgtcaatcctctgaagatcagtgagaagccttacacaccatccttc
tccaaggagaacctcatgagcacagaggagctgaactgtaagacagccaagtgccagcct
atgaaatgtgtcctgaaagacatggggatgatgagtgatttctttgtgaacgtgaccaca
cggatatggaatggtacctttgctgcttcctcattccagtccactgtgctgactgtgagc
acagagatagagacttcccaacctgaactgctggtcatctctcacaagcacctgacggtt
ggcgtcaccatcagtaaaccaggggtgaaaggggagatccctgtaggcgttattgtgggc
agtgtgattggaggcctgcttctattggctctcgtcattggcctgctttggaagtttggt
ttcttcaggagaaagtaccagcagctgatgaaaaacactgatgaagaccaggcggagact
gagggcctgcaggagaacgcagcagcgtga
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integrated database retrieval system
