Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421970
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Entry
139421970 CDS
T10872
Name
(RefSeq) cell adhesion molecule DSCAML1-like
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
DSCAM family
139421970
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139421970
NCBI-ProteinID:
XP_071029214
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Position
12:29360289..29446878
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AA seq
2046 aa
AA seq
DB search
MWLVTLLLLYSLREVHSEDVGSTRLYFVNASLQRLTYSSSVGVSLPCPAGGTPTAILRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPNIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPTAVQEYVSVVSWERDTVSIVPGNRFFLTSFG
ALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESSPSILDSFQAGEVPAG
QSVELPCMAAGYPSPTVRWLKDGRPLPSDARWTRRLTGLTISDLRQEDSGSYACEVTNSF
GSKEVSGALYVIDPLRVTLSPKSLKTGISSTLFFTCAVEGSPEYTVAWYRNTEPIVPDQH
ISIQGSHNDTLQITAAQKSHSGAYQCFASRKGHTAQDFSIILLEDGTPRIVSSFSERVVA
PGEPFSLMCASKGAPPPSITWTLDDEPVVRDSAYKTSQYTLSDGLTVSHVNVSSPAIRDG
GVYRCAARNSAGSAEYQARINVRGSPRIREMRDITAVAGRNTFITCRVIGYPYYSIKWFK
DGMLLPDNHRQVVYENGTLRLSDVQKGMDEGTYLCSVLIQPQTSIDQTVHVTVKVPPLIQ
PFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVGIETKEFMSSLQISK
VTLKHNGNYTCIASNAAATVSWERQLVVTVPPRFVVQPNNQDGIYGKAGVLNCSVEGYPP
PKVMWKHAKGIGNPQQYHPVPLTGRIQIMFNGSLLIRHVLEDDRGYYLCQASNGVGSDIS
KSMVLTVKIPAMITSHPNTTMAIKGQMKELNCTARGEQPIIIRWERGDTVIDAERNPRYS
ITINKKGDEVISTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREV
KDRSMNLRWIQRFDGNSIITSYDIEYKNKSDTWDHKYTTRNISPTNNQANIVELHPACVY
SIRMYSFNKIGRSQPSKELTISTEEAQPDGPPMEVILQPMTSQSIRVTWRAPRKELQNGL
IRGYQIGYRENGPGSNGQYSIVEMKVTGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS
TEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDGE
WGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQTREDLPGPPAGIK
AVPSSPNSVVVSWLPPLKPNGVIRKYTIYCSSPGSGQPAPSEYEANPEMLFYRITHLTRG
KQYLIWASAVTTAGRGNISEKVTVEPAGKAPAKILSFGGTVTTPWVKEVRLPCSSVGEPT
PTIKWTKDSEDSTIPVTVDGQRQILSNGTLVLRSVKAEDSGYYTCTATNTLGFDTIIVNL
LVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNTEEWRDVFISSSER
SFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPVFNKEQPLLTHINSTHAGL
NLQGWTSGGCPITALLLDFRPKGTWAWQSLKANATAQLFLSELREATWYELKMKACNSAG
CGNQSSQFATTDYDGSTIPPINSAHEDRDDVKKLFSIGSPVILVTLGVALLFIIRKKRKE
KRLKRLRDAKSLAEMLISKNNRSMDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQIGED
KAVAPVTDTEFSQSVNPQSFCTGVSLHHPALIQNTGPLIDMSDIRPGTNPVSRKCVKSAH
SSRNRYSSQWTLSRPGQSQSTASARTLTSDWRTMGSHGITATESDSYSASLSQDTDKGRN
SMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITECFISDSSSDQMTTGTNDPADSMT
SLSTPSETGLCRFTASPPKPQDYDRGRPTNVAVPIPHRANKSEFCNLPLYMKTDPFFRKQ
AELHDPCPAVPPREASIRSLAQRAYHTQGRHMTLDPSKQQALTLGHSGLGSLGVSSGTAT
LPQRTLTMPCSNPAATASTSSTSSNPTGSSTKMGGSRDSLLENSSSALGRLQKQGVGAYS
KSYTLV
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttactcctgctgtactctctccgggaagtacacagtgaggatgtg
ggctctaccaggctgtactttgtgaacgcatccctccagaggctgacctactccagctcg
gtgggggtgtctctgccctgcccggcgggcggcacccccaccgccatcctgcgctggtac
ctggccaccggcgatgacatctacgacgtgccccacatccgccacgtccatgccaacggc
accctccaactctaccccttctcaccctccgccttcaactcctacatccacgacaacgac
tacttctgcaccgcagaaaaccaggctggcaagatccgaagccccaatatcagagtcaaa
gctgtgttcagggagccgtatacagtgcgtgttgcagaccaacgctccatgcggggcaac
gtggccgtgttcaagtgcctcattcccaccgccgtgcaggagtacgtcagcgtggtgtcc
tgggagagagacactgtctccatcgtgccaggtaacaggttcttcctgacgtcctttggt
gctctgtacatctcagatgtccagaaggaggatgccctctccacctaccgctgcatcacc
aagcacaaatacagcggagagacacggcagagcaatggagccaggctgtctgtcatggac
cccaccgaatcgtctccctctatcctggacagtttccaggcgggggaagtcccggctggt
cagagtgtggagctcccctgcatggcagcagggtaccccagccccacggtgcgttggcta
aaggacgggcgcccgctgccctccgatgcacgctggacgcggcgcctcacgggtctgacc
atcagtgacctcaggcaggaggacagcggtagctacgcctgtgaggtcaccaacagcttc
ggctcgaaggaggtgtccggagcactctatgtcatagaccccctgcgagtgaccctctcc
cctaagagtctgaagacgggcatcagcagtaccctgttctttacctgtgctgtggagggt
tcgccagagtacacagtggcttggtacaggaacacagaacctatagtcccagaccagcac
atctctatacagggctcccacaacgacaccctgcagatcacagccgctcagaagagccac
tctggggcctaccagtgctttgcctcccgcaagggccacaccgcccaggacttctctatc
atactgctggaggacggcactcctcgtatcgtgtcttccttcagtgagcgcgtggtcgcc
cccggtgagcccttctccctgatgtgtgcctccaagggagccccacccccctccatcacc
tggacgctggacgacgagcctgtggtgcgagactccgcctacaagaccagccagtacacc
ctatcagacggcctgaccgtgtcacatgtcaatgtcagcagcccggccatccgtgacggg
ggagtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgcata
aacgtaagaggttctcctaggatcagggagatgcgtgacatcacggctgtggcaggaagg
aacacctttataacctgtcgtgtgattggttacccctactactctatcaagtggtttaag
gacggcatgctgctgcctgacaaccatcgccaggtggtgtatgagaatggaaccctgagg
ctgagtgatgtgcagaagggcatggacgagggtacctacctgtgtagtgtgctcatccag
ccacagacctccatcgaccagactgtccatgtcactgtcaaagtgccacccctgatccag
ccctttgatatcccctccacgtcggtgggaaagctgatgtacattgcctgcgtggtgtcg
tcaggtgacatgcccatccgcatcacctggcacaaagacgggcaactcatcgtgcctggt
tccgcctctggtgttggcatagagaccaaggaattcatgagctccttgcagatctccaag
gtgacgctgaagcacaacggcaactacacctgcatcgctagcaacgccgcggcaaccgtc
agctgggaaagacagctggtcgtcaccgttccccctcgcttcgtggtccagcccaacaac
caggatgggatctatgggaaggcaggagtactaaactgttctgtggagggatacccccct
cccaaagtcatgtggaaacacgccaaaggtatagggaacccccagcagtaccaccctgtg
cctctgactggtcggatccagatcatgttcaacggctccctgctgattcggcacgtccta
gaggatgaccggggatactacctctgtcaggcctccaatggagtgggctctgacatcagc
aagagcatggtcctcaccgtcaagattccagccatgatcacgtcgcaccccaacaccacc
atggccatcaagggccagatgaaggagctgaactgcacagctcggggcgagcagcccatc
atcatccgctgggagaggggcgacactgtcatcgatgccgagaggaacccccgctactcc
atcaccatcaacaagaagggggacgaggttatctccacactcaagctgaagccagcggag
cgcggggactcagtcttcttctcctgccatgccatcaactcatacggagaggggcgagga
ctcatccaacttaccgtgcaagagcctcctgaccctcctgagttggaggtgagagaggtg
aaggaccgcagtatgaacctgcgctggatccagaggttcgatggcaatagcatcatcacc
agctacgacatcgagtataagaacaagtctgatacttgggatcacaagtacaccaccagg
aacatctcccccactaacaaccaggctaacatcgtggagctgcaccctgcctgtgtctac
agcatccgcatgtactccttcaacaagatcggacgcagccagcctagcaaggagctcacc
atcagcactgaggaagcacaacctgatgggccccctatggaagtgatcctccaaccaatg
acgtctcagagcatacgggtcacatggagggcccccagaaaggagcttcagaacgggttg
atccgggggtaccagatcggttaccgtgagaacgggccgggcagtaacggccaatacagc
attgtggagatgaaggtcacaggggacagtgaggtgtacaccctggacaacctgaagaag
tttgcccagtatggagtggtggtccaggccttcaacagggctggcactggtccctctagc
actgagatcaatgctaccacactggaggatgtgcccagccagccgccccagaacgtgcgg
gctatctcggtgacctcagacgaggcggtgatcacgtgggcggagcccccgcgtctgacg
ctgcatggcgtgttgaagggctaccgtgtggtgttctggtccctcttccctgacggagaa
tggggagagatgcaaaacatcactacaactcgtgagcaggtggagctgagagggctggag
aagtttactaactacagtgtccaggtgctggcctacacacaggctggggatggggtcagg
agcaatgtcctgtacatccaaacccgcgaggacctcccaggtcctccagctggtatcaaa
gccgtgccctcatctcccaacagtgtggtcgtgtcctggctacccccccttaaacccaat
ggtgtcatccgcaagtacaccatctactgctccagcccaggctccggacagccggctccc
agtgagtatgaggccaacccagagatgttgttctacaggatcacccatctgacccgcggt
aaacagtacctcatctgggcctccgccgtgacaactgctggccgcggcaacatcagcgaa
aaggtcaccgtggagcctgctgggaaagccccagctaagatcctgtcgttcgggggcaca
gtgactactccctgggtgaaggaggtccgtctgccctgcagctcagtgggagaacccacc
cccaccatcaaatggaccaaagacagtgaggactcgactatccctgtgactgtggacggg
cagcgtcagatcctgtccaacggtactctggtgttacgttccgtcaaagctgaggattct
gggtactacacgtgcacggccaccaacaccctgggctttgacaccatcatagtaaaccta
ctggtgcaagttcctccagaccagccccgtctgaccgtctccaccacctccacctcttcc
atcaccctggcctggatccctggggacaacggaggcagctccatcagaggtttcgtcctg
cagtactcagtggacaacacagaggagtggagggatgtgttcattagttccagtgagcgt
tccttcaggctggacaacctgcgctgtgggacctggtacaaggtcaaactggcagccaag
aacagtgtgggctcaggacgcatctctgagatcatcgaggctaagacccacggacgagag
cccgtgttcaacaaggagcagcccctgctcacccacatcaactccacccacgcggggctc
aacctgcagggctggaccagcggcggctgccccatcaccgctctgctgctggacttccgg
cccaagggcacgtgggcctggcagagcctgaaggccaatgccacggcccagctattcctc
agcgagctgcgggaggccacctggtacgagctgaagatgaaggcctgtaatagcgccggc
tgtgggaaccaaagctcccagtttgccaccacagactatgacggcagtaccatccctcct
ataaactcggcccatgaggacagagatgatgtgaagaagctgttctccatcggttctcct
gttatcctggtcaccctgggcgtcgccctgctcttcatcatccgcaagaaacgcaaggag
aagagactcaaacgactcagagatgcaaagagccttgcagagatgcttatcagtaagaac
aaccgcagcatggacaccccagtgaagggtcctccccagggccctcggctccacattgac
atccctcgtgtccagctgctcatcgaggacaaggagggcatcaagcagataggtgaggac
aaggcagtggccccagtgacggacacagagttcagccaatcagtgaatccacagagcttc
tgcacgggtgtgtctctgcaccatcctgccctcatccagaacacagggcccttgattgac
atgtcagacatccgccctggaaccaatccagtgtcgaggaagtgtgtgaagtcagcccac
agctccagaaaccgctactccagccagtggaccctgagcaggccgggccagagccaatca
acagcctccgcaaggactttgacctctgactggcgcaccatgggctcccacggcatcacc
gctaccgagagtgacagctacagcgccagcctgtcccaggatactgacaagggtcgtaac
agcatggtgtccacagagagtgcgtcgtctacgtatgaggagctggcgcgggcctacgaa
cacgccaaactggaggagcacctgcagcatgccaagttcaccatcacagagtgcttcatc
tccgacagctcctctgaccagatgaccacaggcaccaacgacccggccgacagcatgaca
tcactcagcaccccatccgagacaggcctgtgtcgcttcaccgcctcgccacccaaaccc
caggactacgaccgcggcagacctaccaacgtggccgtgcccatcccccaccgtgccaac
aagagtgaattctgcaacctcccgctctacatgaagacggatcctttcttccggaagcag
gcagaactgcatgacccatgccctgcagtcccgcccagggaggcctccatccgcagcctg
gcacagcgggcgtaccacacccaaggacgtcacatgactctggacccgtccaagcaacag
gccctgacgctaggccactctgggttgggcagtctgggcgtgagctcaggcactgccacc
ctgccccagaggactctcaccatgccctgctccaaccctgcagccacagcctccacgtcc
agcaccagcagcaaccccactggctccagcacaaagatggggggctccagagactcactg
ctagagaatagctcctcagcgctgggcagactgcagaagcaaggggttggggcctactct
aagtcttacacactggtgtag
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