KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422160
Entry
139422160         CDS       T10872                                 
Name
(RefSeq) interferon a3 isoform X1
  KO
K05414  interferon alpha
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060  Cytokine-cytokine receptor interaction
ocla04217  Necroptosis
ocla04620  Toll-like receptor signaling pathway
ocla04621  NOD-like receptor signaling pathway
ocla04622  RIG-I-like receptor signaling pathway
ocla04623  Cytosolic DNA-sensing pathway
ocla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    139422160
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    139422160
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    139422160
   04621 NOD-like receptor signaling pathway
    139422160
   04622 RIG-I-like receptor signaling pathway
    139422160
   04623 Cytosolic DNA-sensing pathway
    139422160
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139422160
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ocla04052]
    139422160
Cytokines and neuropeptides [BR:ocla04052]
 Cytokines
  Interferons
   139422160
SSDB
Motif
Pfam: Interferon Exo84_C DUF4635
Other DBs
NCBI-GeneID: 139422160
NCBI-ProteinID: XP_071029415
LinkDB
Position
12:66495820..66499553
AA seq 175 aa
MYTMQSWSCIFVIICSMQSVCHCCDWIRHHYGHLSAEYLSLLDQMGGDITKQNAPVLFPT
SLYRHIDDAEFEDKVIFLKETIYQITKLFDGNMKSVTWDKKNLDDFLNILERQLENLNSC
VSPAMKPERRLKRYFKKLNRKVLRKMNYSAQAWELIRKEMKRHLQRLDILAAQMY
NT seq 528 nt   +upstreamnt  +downstreamnt
atgtatacaatgcagagctggagttgtatttttgttattatttgcagtatgcagagcgtg
tgtcattgctgtgactggatccgacaccactacggtcacttgagcgcagaatacctttcc
ctgctggaccagatgggaggagatatcacaaaacagaatgccccagtccttttcccaaca
tcactttacagacacatagatgatgctgagtttgaggacaaagtcatattcctgaaagag
accatctatcaaatcacaaaactgtttgatgggaatatgaaatctgtcacctgggacaag
aaaaacctggacgatttcctcaacattctagaacgccaattggagaaccttaattcctgt
gtatcacctgccatgaaacctgagaggagactgaaacggtacttcaagaagttgaatagg
aaggttctgagaaaaatgaactacagtgcacaggcgtgggagctcatcaggaaagagatg
aaacgtcatctgcaaagattggatatccttgcagcacagatgtactga

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