Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422189
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Entry
139422189 CDS
T10872
Name
(RefSeq) perforin-1-like isoform X1
KO
K07818
perforin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04210
Apoptosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
139422189
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Motif
Pfam:
MACPF
C2
EGF_PRF1
RecE_M
Motif
Other DBs
NCBI-GeneID:
139422189
NCBI-ProteinID:
XP_071029449
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Position
12:68822314..68826573
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AA seq
562 aa
AA seq
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MPVNLLLFLLFLPVCHGCHTGSFTDCQKAPFVPGHNLAGEGFDIVKMQTSGAFVVDVRKF
MVGGHDGNCTLCTNTLMGGQVQKLPLSVLDWRTKVKCRRSLSSQMYESSTSVLKETANAA
SVSWKAGLGIKGIAGVAVGGTHSKTAMFARGHSTNDKFSFTSHEFKCEYYTFRIRTQPPL
SQEFQDSLKNLPSTYTHMTNPSYSQFISIYGTHYIRNVHLGGRVHSTTAIRTCKMAMSGL
SLHSVSNCLGVEASGTIKGVTISAETKYCKSLSNKLKTGVSFGATFSDRVTEVQGGNVEV
EDILFSPDKKSGYKTWLKTLNKVPGVVSYQLSSLHFLARDNPILKANLRNAIRDYIQKNA
VSTSCPSACKTGRRNKGCACICSGHRNVDSNCCSSKPGVARMNVTVVRATGLWGDYFSKT
DGYVKVLYGKQGGSTPVIWNNDFPHWNYRIQYGTVDLKSKQALNFEVWDRDNRWNDNLLG
KGSITPQRGMNVNQSFKLKHGTLYVSLSVVCGPSLKGAFCDQYAPSPGSQGRLSYVHAWD
RATETLPTLFQGSHSTRNRTFL
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcaaccttctactcttcctcctcttcctccctgtgtgtcacggctgccacact
ggctccttcaccgactgccagaaggctccgttcgtccccggccacaacctggccggagag
ggtttcgacatcgtcaagatgcagacctccggcgcctttgtggtggatgtgcggaagttc
atggtgggtgggcacgacggtaactgcaccctgtgcaccaacactctgatgggcggccag
gtccagaagttaccgctctccgtactggactggcgcacaaaggtgaagtgtcgtcggagc
ctcagcagccagatgtacgagtcgagcacctccgttctaaaggagaccgctaacgctgcc
agcgtcagctggaaggctggcctgggaatcaagggcattgctggggttgctgttggaggc
acacactccaaaactgccatgttcgccagaggccactccaccaatgacaagttctctttt
accagccatgaattcaaatgcgaatattacacctttcgcatccgaacccaaccccctctg
agccaggagtttcaggactccctaaaaaacctgcccagcacgtacactcacatgaccaac
ccttcctacagccagttcatctccatctatggcacccactacatccgcaacgtgcacctg
ggggggcgggtgcactccaccacagccatacgcacctgtaagatggccatgagcggcctc
tccctccattctgtcagcaactgtctgggggtggaagccagtggcaccatcaaaggtgtc
acgatcagcgccgagaccaagtactgcaagtccctgagcaataaactgaagacaggcgta
agcttcggagccaccttctcggaccgcgtcaccgaagtgcagggcggcaacgtcgaggtt
gaggacatcctcttcagccctgacaagaagtctggctataaaacctggctgaagaccctg
aataaggtccctggtgtggtctcctaccagctcagctccctgcatttcctggccagagac
aaccccatccttaaggccaacctgcgcaatgccatcagagactacatccaaaagaacgct
gtgtccacctcctgcccttctgcttgcaagacagggagacgcaacaaaggctgtgcctgt
atctgtagcggtcacaggaatgtggactccaactgctgctccagtaaaccgggcgtggcc
aggatgaatgtgacggtggtccgagctacggggctctggggcgactacttctctaagaca
gacggctatgtcaaggtcctctacggaaagcaaggcggttccactcctgtgatctggaac
aatgacttcccccactggaactataggattcagtatggaacagtggatttgaaaagtaaa
caagccttgaactttgaggtgtgggaccgcgacaacagatggaacgataacctgctagga
aagggctccataacccctcaaaggggcatgaacgtcaaccaaagtttcaagttgaaacat
ggcacgctttatgtctccctgtctgtggtctgcggccccagccttaaaggagccttctgt
gatcagtatgccccctcacctgggtcccagggtaggctgagttacgtccatgcctgggac
agagcgacagagacgttacccaccctcttccagggttctcacagtacccggaacaggacc
ttcctgtga
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