KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422296
Entry
139422296         CDS       T10872                                 
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like
  KO
K05211  glutamate receptor ionotropic, NMDA 2C
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04020  Calcium signaling pathway
ocla04080  Neuroactive ligand-receptor interaction
ocla04082  Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04020 Calcium signaling pathway
    139422296
  09133 Signaling molecules and interaction
   04080 Neuroactive ligand-receptor interaction
    139422296
   04082 Neuroactive ligand signaling
    139422296
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:ocla04040]
    139422296
Ion channels [BR:ocla04040]
 Ligand-gated channels
  Glutamate (ionotropic)
   139422296
SSDB
Motif
Pfam: Lig_chan Lig_chan-Glu_bd ANF_receptor NMDAR2_C SBP_bac_3
Other DBs
NCBI-GeneID: 139422296
NCBI-ProteinID: XP_071029587
LinkDB
Position
12:complement(80308727..80382546)
AA seq 1414 aa
MGVRLGPLSDSPWWWPLLLLLLLCTAPWCQGRPFATPLPAVNVAVVFSGSAYQQEIKGRL
SRENFMDLPLEVNPITVLVNNTNPRALLTRICDTLAANRVHGVVFEDNIGSEAVAQILDF
IALQTAVPIVGISGGSAMVLPHKGEGSTFLQLGSSIEQQINGMFKVMEEYNWDSFVVITS
LYPGYEVYVDYVKTFTDTSYFMWELQDVLTFDMSADGMNDIRARRLLQQIDAQVLLVYCS
HEEAQYLFRMAGEVGLLGPGYIWILPSLAVGNPDMPPPNSFPVGLISIITDRWRMSLRKR
VRDGVAIVVKGVQSFHKQKGFIPEGHNDCHSPVRASSNDTLFRHMLNVTWEHNDFSFNPE
GYLINPAMVIITLDRERQWDKVGNYEMGILQMRYPVWPRYGTYLEPVSDNRHLTVATLEE
RPFVIVEAVDPMTGTCVSNTVPCRRQSNKTETIVGHTEPYTKLCCKGFCIDILKKLSRTT
KFSYDLYLVTNGKHGKLVRGSWNGMIGEVVYKRADMAIGSLTINEERSEIIDFSVPFVET
GISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFIFEYCSPVGYNRSLVSA
KDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKVMVLVWAFFAVIFLASYTANLAA
FMIQEQYTDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHAHMVKYNQK
GVEDALNSLKSGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKESRW
KRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLS
LLVFSWEHLLYWKLRHSVRKSERLDFLLAISRGIYSCFNGVEDSDRNGNLQNPDVTTNYT
QANMLKMLQTAKDIVTSTRVENSLDNATKTIENWSRRGADNVRVGLPPRVATTIDMGHSR
LPYISSITDNHSPYPQRALASTFPIHYSDSTTQPLLDKSRVVTRPTPLRYTLPARGSHHF
YERTLPISSLSSPHIAMRDPAPPSTSSHNPHPHHSSRLYVETQPRHPTSPFVPYREFQVP
DIYVEHHKGPLGRKFSYPPDHMGRKKRSHSYVFSEAQDTRGRNDYDEPTSCLAELRANHL
LNNHAPSASTMACMGGHYPSGSASCNSCMKPYLEPEMEDVPLLGKDKVNRRASFLKTTWS
SDRIRQLGEKPSTSTMPDLFPRVVVANPKPHKLYGSQGNNLCYPLAAEPAYLDPAHMRSY
PYKQHKLKCSQSTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPLPQ
GPGQFYNKDMCHLFPCASHCPNNNALVPRMGDRQVVYQNNMFGGYEGAVGRSREEPPLPG
SGSRDRREVLVARRVNSPYVPKTWGRVSSLESEV
NT seq 4245 nt   +upstreamnt  +downstreamnt
atgggcgttcgtctaggccccttgagcgactccccgtggtggtggccgctactgctgctg
ttgctgctctgcactgccccctggtgccaaggtcggcctttcgcaacgcccttgccagca
gtcaacgtggcagtggtgttcagtggctcggcctaccagcaggagatcaaggggcgtctc
agcagggagaacttcatggacctgcccttggaggtgaatcccatcacagtgctggtaaac
aacaccaaccctcgggccctgctcacacgcatctgtgacacactggcggccaaccgcgta
catggtgtggtgtttgaggacaacatcggctcggaagctgtggcacagatcctggacttc
attgccctgcagacggccgtgcccatcgtgggcatcagcgggggctccgccatggtcctg
ccacacaagggcgagggctccacgttcctccagctgggctcctccatcgagcagcagata
aacggcatgttcaaggtgatggaggagtacaactgggacagcttcgtggtcatcaccagc
ctgtacccgggctacgaggtctacgtggactatgtcaagaccttcactgacaccagctac
ttcatgtgggaactgcaggacgtgctgaccttcgacatgtctgccgacggcatgaacgac
atccgggcacggcgcctgctgcagcagatcgacgcccaggtactgctggtatactgctcc
cacgaggaggcccagtacctgttcagaatggccggagaggttggcctgctggggcctggc
tacatctggatcctccccagccttgccgtggggaacccagacatgcccccaccaaacagc
ttccctgtgggcctcatcagcatcatcaccgaccgctggcggatgagcctgaggaagagg
gtgcgggatggggtggccatcgtggtcaaaggggtgcagagcttccacaaacagaaggga
ttcatccccgagggccacaacgactgccacagccctgttagggcatcttctaatgataca
ctgttcaggcacatgttaaacgtaacatgggaacacaacgacttctcgttcaaccctgaa
gggtacctgatcaacccggctatggtcatcatcaccttagatcgagagagacagtgggat
aaggtggggaactatgagatggggatcctgcagatgagatacccggtgtggcctcgctac
ggcacctatctggagcccgtatcagataacagacacttgactgtggccacactggaggaa
cgtccctttgtcatagtggaggctgtcgaccccatgactgggacctgtgtcagcaacact
gtgccctgccgccgccagtccaacaagacagagactattgtaggtcatactgagccctac
accaaactgtgctgtaagggtttctgcatagacatcctgaagaagctgtcccgcaccacc
aaattctcatacgacctctacctggtcaccaacgggaagcacggcaagctggtcagaggc
agttggaacggcatgatcggagaggtggtatacaagcgggcggacatggccattggctcg
ctgaccataaacgaagagcgctcagaaattatcgacttctccgtgccgtttgtggagacg
gggatcagtgtgatggtcgccaggagcaatgggaccgtctcaccctctgcctttcttgag
ccctacagtccggcggtgtgggtgatgatgtttgtgatgtgcttaacggtggtagctgtc
acagtgtttatctttgagtactgcagccctgtggggtacaaccggagtctggtgagcgcc
aaggatcccggaggccccaccttcactattgggaagtctgtgtggctgctttggggcatc
gtcttcaacaactctgttccaattgagaaccccaagggcaccaccagcaaggtcatggtc
ctggtatgggccttcttcgctgtcatcttcctggcctcctacactgccaacctggcagcc
ttcatgatccaggagcaatacactgacacagtctctggactgagtgacaaaaagttccag
aagccacaggagcagtatccaccgtttcgttttggtacggtcccaaatggaagcacagag
aggaacatccggagcaactaccctgagatgcatgcccacatggtcaaatacaaccagaag
ggtgtggaggacgccctcaacagcctcaaatcagggaaactggatgccttcatctatgac
gctgctgtgctgaactacatggcaggtaaagacgagggctgtaagctggtgaccatcggc
agtgggaaggtctttgccaccactggctacggcatcgccttgcagaaggagtcccgatgg
aaacgtcctatagacctggccctgctccagttcctagcggatggtgacacgcagaagctg
cagacggtgtggctcacagggatctgtcgtaacgagaagaaggaggtgatgagcagtaag
ctggacatagataacatggcgggcgtcttctacatgctgctggtggccatggggctcagt
ctcctggtgttcagctgggaacatctgctctactggaagctgagacactcagtacgcaag
tctgaacgcctcgacttcctgctcgccatcagcaggggaatctacagctgcttcaacggc
gtggaggactctgaccgcaacggaaacctgcagaaccctgacgtcaccaccaactacacc
caggccaacatgctgaagatgctgcagacagccaaggacatcgtgacctcgaccagagtg
gagaactccctggacaatgccaccaagaccatagagaactggagccggcgaggagccgac
aatgtgcgggttggcctgccgcctcgggtggcaaccactatagacatgggccacagccgc
ctgccctatatctccagcatcacggacaaccactcaccctacccccagagggcgctcgct
tccacattccccatccactactcggacagcaccacccagcccctgctggacaaatccagg
gtggtgacgcggcctaccccgctccgctacacccttccggcccgtggcagccaccacttc
tacgagaggaccctacccatctccagccttagcagcccccacatcgccatgagggaccct
gctccccctagcacctccagtcacaacccacacccccaccacagcagcaggctgtatgtt
gagacccagccccggcaccccacctccccgtttgtcccttacagagagttccaggtgcct
gacatctatgtggaacaccacaaggggcccctgggacggaagttcagctacccccctgac
cacatgggcaggaagaagaggtcccacagctacgtgttttccgaggcccaagacaccagg
gggaggaacgactatgatgagccaacctcctgtctggctgagctgagggccaaccacctc
ctgaacaaccacgccccttctgcatcaaccatggcatgcatgggggggcactaccccagt
ggcagcgccagctgcaactcctgcatgaagccctacctggagcctgaaatggaggatgtg
cccttgctggggaaggacaaggtcaaccgccgggcctcttttctcaagaccacctggagc
agtgacaggatccgccagctgggtgagaagccctccacctccactatgcctgacctgttc
ccccgcgtagtggtggccaatcccaagccccacaagctgtatggcagccaggggaacaac
ctgtgctaccccctggccgctgagcctgcctacctagacccggctcatatgcgttcctac
ccctacaagcagcataagctcaagtgctcccagtccacccggctaccatcctacagggag
gctatcctgcagaacgcagccgccttgcggcgctcctcctccactgtggtgcacagacac
tactccacctacctgaactcctacacagacctgcctgtatacgtggggccgctgccccag
gggcccgggcagttctacaacaaggacatgtgccacttgttcccctgtgcaagccactgc
cctaacaacaatgccctggtgccccgtatgggggaccggcaggtggtgtaccagaacaat
atgtttgggggctacgagggcgcggtggggcggtcgcgagaggagccccccctgcccggg
tctgggagcagggatcggagggaggtcctggtggccagaagagtcaacagtccctatgtg
ccaaagacctggggcagggtatccagtctggagtctgaggtctga

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