Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422344
Help
Entry
139422344 CDS
T10872
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139422344
Pattern recognition receptors [BR:
ocla04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
139422344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
TIR
TIR_2
LRR_9
LRR_EndoS
LRR_NXF1-5
DHU1_N
Motif
Other DBs
NCBI-GeneID:
139422344
NCBI-ProteinID:
XP_071029646
LinkDB
All DBs
Position
12:88338870..88344234
Genome browser
AA seq
1032 aa
AA seq
DB search
MRSMFSHPAVLFLWIQSSSGWMHPKCQIYDSSEDLGHIPTWICSQLPHHAECYTAACQDV
TAIEEDLLGLPPNINTFCISMTHGENRSMSLGFFSQFQDLEYLCIKGCFTKILPIGKSHL
PNLQYLHLDGLGFGCCDCHFGPHTFRDLVKLSHLTIWGYRLSAMSPDVFHGIPLLQSLII
REPCLEDLSEIQCRIMNIKSLIELKIEAPEIQSINQSNCSISITNESMKPVFNNLAFSDV
SFGEITHIEEGSLAWLQNLTMLTGAFSQEVLLDLPLSGIQQIQDFSCYGSNEIDIESICN
VVILFSIKKLFVNNFNTSSLSMSSVELCIGLEYMYLHGIFCSTPYLDWHFISSLKNLNQL
TIAGLEDNRLDICSFQKQPITWLTKLTLGLNNIQMLFAKQFICLVNLQYLDLADNSISNI
DDFAFMGLTNLKSLDISRNKITQINTNTFYGLQLTKLTLRLNKLHMLFAKQFSCLVKLLY
LDIKQNLISNIEDFAFLGLTNLESLDITRNKITQINANTFYGLHSLTWLDLRNNPLIHNI
EAMSFTHLMSLRQVFLGQVHNPLTEPVIKLNLTLIFGGIVSQLTHLYISSAMRPMQLTIG
SNITSKQNLSLQLKGQTVSFQDCDRPFFQSVTHLHADAEEFLCGSEFMGKYFTSVETFDY
RSKLSAKRVDLTSINQLIHLRKLTLRQVDLLIQRSADIIFHNLTKLEVLEMYHCRIYSLE
GSLTKDLKSLKILYFHIENIYNVFYSFTEPLSSLKYLILPQIQIFCSCDNAWLITWAKGY
RQVEVIMLTPYTSPVMYALEDLICLSDNGIDTPNFVRYTEANCTTEVGFVLFVATGLGVL
FFMLVVLVHNLAGPYLLPLYHITLGWLLEAMRSNTKGRYHYDAFVSYSGKDERWVVEELL
PNLEQRGPPFLRLCLHSRDFQLGKDIVENITDSLYRSRHTLCLVSRHYLRSNWCSLEMKL
ATYRLQLEQRDILLLVFLEKIPPRRLSAHHRLARLLKTRTYLDWPQDPLQHQAFWDRLWA
KLKPQTEHEIRC
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgagatctatgttttcccaccctgccgtcctgttcctgtggattcagagttctagtgga
tggatgcatcctaaatgccagatttatgacagtagtgaagacttgggacacattcccacc
tggatctgcagccaactacctcatcatgcagaatgttacacagctgcctgtcaagatgtc
acagccatcgaggaggatctacttggacttccccctaatatcaataccttctgcatatct
atgacacatggtgaaaatagatccatgtctctgggctttttctctcagtttcaggatctg
gagtacctgtgcattaagggctgttttactaaaatccttccaattgggaaaagccacctt
ccaaatctgcagtatttacatttggatggattgggctttgggtgctgtgattgtcatttt
gggcctcatacattcagagatttagtcaagctgagtcatttgaccatatggggttatcga
ctatcagcaatgtccccagatgttttccatggcattcctctgttacaaagtctcatcatt
agggaaccctgtttagaggatttgtcagagatacaatgcagaataatgaatataaagtca
cttatagagctaaaaatagaagcaccagagatacaatcgataaaccaatcaaactgctcc
atttcaataaccaacgaaagcatgaaacctgtttttaacaatctagcattctctgacgtc
tcatttggtgaaataacacatatagaggaaggttcactggcttggctccagaacctcaca
atgttaacaggggctttcagccaggaagtcctactggaccttcccctgtctgggattcag
cagatacaggacttcagttgctatggtagcaatgaaatagatattgaaagtatctgtaat
gtagttattttgttttcaatcaagaaattatttgtaaacaatttcaatacaagcagcctc
tctatgtccagtgttgaattgtgcattgggctagaatatatgtatttacatggcattttc
tgttctactccatatttggattggcattttatttccagtctaaaaaaccttaaccaatta
acaatagccggcctagaagacaacagacttgatatttgctccttccaaaaacaaccaata
acatggttaacaaaactgactttagggttgaacaatatacagatgctttttgctaaacaa
tttatctgtcttgttaacctacagtatttagatttagcagataattcaatttcaaacatt
gacgactttgctttcatgggattaacaaatctgaaatccttagacatttcaagaaataag
ataacacagataaatacaaacacattttatggtttacaactgacaaaactgactttaagg
ttgaacaagctacacatgctttttgctaaacaatttagctgtcttgttaagctcctgtat
ctcgatataaaacagaatttaatttcaaacattgaagactttgctttcctgggattgaca
aatctggagtccttggacattacaagaaataagataacacagataaatgcaaacacattt
tatggtttacatagtttgacatggttagacctcaggaacaatccacttattcacaacatt
gaggcaatgtctttcacacacctcatgtctcttagacaagtgtttctcgggcaagtgcac
aacccactaacagaacctgtgatcaagctgaatctgacacttatatttggtggaattgtg
agtcaactgactcatctgtacattagttcagctatgaggccaatgcagttgactattggc
agtaacatcacatctaaacagaatctgagtctccagctcaaaggccagacggtgtcattt
caggactgtgacagacctttctttcagtctgtaacccatcttcatgctgatgctgaagaa
ttcctttgtggatctgaattcatgggaaagtacttcacgtctgtggagacatttgactac
agatcaaagctttcagctaaaagggttgatttaacatcaattaatcagctgattcacctg
aggaaactgactctacgacaggtggatcttttaatacagcgttctgccgacatcattttt
cacaacttgaccaaactggaggttctggaaatgtaccactgcaggatttactctttagag
gggagtttaactaaagacttaaaatctttgaaaatattgtattttcatatagagaacatt
tataatgtattctacagctttactgaacctctctctagccttaagtatttgatacttcct
cagatccagatcttttgcagttgtgacaatgcttggctcattacatgggcaaaggggtac
aggcaggttgaagtgatcatgcttactccgtatactagtcccgttatgtatgctttggag
gacttgatatgcttgtcggacaatggaatagacacacctaattttgtcaggtacacagaa
gccaactgcacaaccgaggttggctttgtgctctttgttgcgactggcctgggagtcctg
ttcttcatgctggtggtgttggtccataacctggccggcccctacctcctccccctctac
cacatcacccttggctggctgttagaagccatgcgatccaacaccaaggggcgctaccat
tacgatgcgtttgtctcctatagcgggaaggacgagcgctgggtggtggaggagctgcta
cctaacctggagcagaggggtcctcctttcctgcgcctctgtctgcacagcagggacttc
cagctgggaaaggacattgtggagaacatcacagacagcctctaccggagccgccacacc
ctctgcctagtcagccgccactacctacgcagtaactggtgctctctggagatgaagctg
gccacctacaggctgcagctggagcaaagggacatcctcctcctggtcttccttgagaag
atcccccctcgccgtctgtctgcccaccacaggctggctcgcctgctgaaaaccaggact
tatctggactggccccaggacccccttcagcaccaggcattctgggacagactgtgggct
aaactgaaacctcagactgagcatgagatcagatgttga
DBGET
integrated database retrieval system
