Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422374
Help
Entry
139422374 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase TRAF7 isoform X1
KO
K10646
E3 ubiquitin-protein ligase TRAF7 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139422374
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139422374
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
139422374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
EIF3I
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IP5PC_F
WD40_like
Beta-prop_SPT8
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
Sina_ZnF
zf-C3HC4_4
Beta-prop_IFT140_2nd
zf-C3HC4_3
zf-TRAF
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
zf-RING_5
Beta-prop_RIG_2nd
DUF16
DUF1664
Filament
WDR90_beta-prop_4th
DUF4164
HMMR_N
Motif
Other DBs
NCBI-GeneID:
139422374
NCBI-ProteinID:
XP_071029678
LinkDB
All DBs
Position
12:complement(93630419..93686288)
Genome browser
AA seq
673 aa
AA seq
DB search
MEASFGPTFSAVVPGAKTEASGPYKQHRRTPSSSSTLTYSPRDDEDGMLPISTPRRSDSA
ISVRSLLSESNMSLRSTFSLHEDDDDTEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHT
FCRRCALTSDKCPVDTAKLTVVVNNIAVAEQIGELFIHCKYGCRLLNTTPTSPNGAGGGA
SPNGAGGGTAASRGEGTPKMGGPGNFEVDPMGCPFTIKLTTRKEHEVSCDYRPVRCPNNP
SCPPLLTMNLEGHLKECEHIKCPHSKYGCAFIGNQDTYSTHLDLCKFEGLKEFLQQTDDR
FHEMQVTLSQKDQDIAFLRSMLGKLSEKLDQLEKNLELKFDVLDENQSKLSEDLMEFRRD
ASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSTGDLLFSGSSD
KTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGNRLYSGSADCTIIVWDVQTLQKVNTIRA
HDNPVCTLVSSHSMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVASQNHLYSGS
YQTIKIWDIRSLDCVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTG
HVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLF
SGAVDSTVKVWTC
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaggcctctttcggccccaccttctcagccgtggttcctggagctaaaacggaagcc
tccggtccctacaagcagcatcgccgtaccccctcctcctccagtaccctcacatactcg
ccacgagacgacgaggatggcatgctccccatcagcaccccgaggcgttctgactctgcc
atctcggtgcgttccctcctctctgagtccaacatgtctctccgctcgaccttctctctt
cacgaggacgacgacgacacggagcccctggtgtttgcagagcagccgtcggtgaagctg
tgttgtcagctctgctgcagcgtcttcaaagaccctgtcatcaccacctgtgggcacacc
ttctgcaggcgatgtgccttgacctccgataagtgtccggtggacacggctaagttgacg
gtggtggtgaacaacatagctgtagcagaacagataggagagctgtttatccactgtaaa
tacggctgccggctcttaaacaccacccccacttcccctaatggggccggaggaggggct
tcccctaacggtgccggaggaggcactgctgctagtcggggtgaagggacacctaagatg
ggaggacctgggaactttgaggttgatccaatgggctgtcctttcaccatcaagctcacc
acacgcaaggagcatgaggtgagctgtgactaccgtccagtgcgctgtcccaacaacccc
tcctgccctcctctactcaccatgaacctggagggacaccttaaggaatgtgaacacatc
aagtgccctcactccaaatacggatgtgcgtttataggtaaccaggatacgtattccacc
catctggacctgtgtaagtttgaagggctgaaggagttcctgcaacagactgatgacagg
ttccatgagatgcaggtgaccctgtctcagaaggaccaggacattgccttcctgaggtcc
atgctggggaaactgtctgagaaactggaccagctggagaagaacctggaactgaagttt
gatgtcctggatgagaaccagagtaagctgagtgaagacctgatggagtttaggagagat
gcctccatgctcaacgatgagttgtcccacatcaacgccagactcaacatgggcatcctg
ggctcctacgacccccagcagatctttaaatgtaaagggacgttcgtaggtcaccagggg
ccagtctggtgtctgtgtgtctactctacaggggacctgctcttctctgggtcctcggac
aagaccatcaaggtgtgggatacctgcaccacctataaatgtcagaagactctggagggt
catgatggaatcgtgctggcactgtgtatacaggggaacagactgtatagtggctcagct
gactgcaccatcatagtgtgggacgtccagaccctgcagaaggtgaacacaatccgtgcc
catgacaacccggtgtgtacgctggtgtcctcccacagcatgctgttcagcggatccctc
aaggccatcaaggtgtgggacatagtggggacagagttgaagctgaagaaggagttaaca
ggactgaaccactgggttcgtgctctggtggcctctcagaaccacctctacagtggatca
taccagaccatcaagatctgggacatccgttccctggactgtgttcatgtcctccagacc
agtgggggcagtgtctattccatcgctgtcaccaaccatcacatcgtctgtggcacctac
gagaaccttatacacgtctgggatatagagtccaaggagcaggtgcggaccctaacgggt
catgtggggacagtgtacgctctagcagtcatctctacaccagaccagaccaaggtgttc
agcgcctcctatgaccgctcactcagggtgtggagcatggacaacatgatctgtacccag
accctcctcagacaccaggggagtgtaaccgccctggccgtcagcagggggcgcctgttc
tctggagctgtggacagcaccgtcaaggtgtggacatgttag
DBGET
integrated database retrieval system
