Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422423
Help
Entry
139422423 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: melatonin receptor type 1C
KO
K04285
melatonin receptor type 1A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139422423
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
ocla04030
]
139422423
G protein-coupled receptors [BR:
ocla04030
]
Rhodopsin family
Others
Melatonin
139422423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srx
7TM_GPCR_Srv
Motif
Other DBs
NCBI-GeneID:
139422423
NCBI-ProteinID:
XP_071029708
LinkDB
All DBs
Position
12:26831898..26835066
Genome browser
AA seq
374 aa
AA seq
DB search
MFNHNHAAFWFSSPSQEENRNRISHHNRTKRHGDRQRQQELRKEEWTWGDELDGKGPWVQ
PIEYCRPKEELERRWYEEAARRRGWKPESQPRKFIGGGTQGVWRSQGISLVSLSVADMVV
XPNLLALLAIFHNDWTVGGVHCQLRGLIMGLSVIGSIFNIMVIAINRYCYICHSLHYNRL
FSTRNTCCYLGITWLLTAMVTVHNVFVGSLQYDPCIYSCTFAQTXSSYYTISVVLIHFLV
PLSVVCYCYLRIWVLVIQVKQRVKPNDKQKLKPSDLHNFLXYVVFLLFAVCWGPLSFIDL
AVATDPEGYLNAVIYGLLNQNFRKEYQRIFLWLCTALTVFVEGSRCGTEGFIRTSKQSHV
VSNSNQAEGEPVGE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaccataaccatgcggcattttggttctcctctccttcccaggaagaaaaccgt
aacagaatctcccaccacaacaggaccaagcggcatggggacaggcagcggcagcaggag
ctgcgcaaagaggaatggacatggggggacgaattggacggtaaaggaccctgggttcag
ccaatagaatattgccgccccaaagaggagctggagaggcgctggtatgaggaggcagca
cggcggcgtggatggaagccagagagtcagccccgaaaatttattggggggggcacacag
ggagtatggcgaagccagggaatatctttggtgagtctgtcggtggcagacatggtggtg
nngcctaacctcctggctctcctggccatcttccacaatgactggacagttgggggcgtg
cactgccagctcagaggcttaatcatgggcctcagtgtcattggctccatcttcaacatc
atggtcattgccatcaaccgctactgctacatttgtcacagcctgcactataaccgcctg
ttcagcaccaggaacacctgctgctacctgggcatcacctggctgctcactgccatggtc
acggtgcacaacgtctttgtgggctcactgcagtacgacccatgcatctactcctgcacc
ttcgcccagactngcagctcctactacaccatctctgtggtgctcatccacttcctggtg
cccctctcggtggtctgttactgctacctgaggatctgggtgttagtcatccaggtgaaa
caaagggtgaaaccaaatgacaagcagaaactaaagcccagcgaccttcacaacttcttg
nactatgttgtgttcctattgtttgctgtgtgctggggaccactcagctttattgacctg
gcagtggccactgacccggaagggtatctcaatgctgtcatctacgggctactcaatcag
aactttcgtaaggaataccagcgcatcttcctgtggctgtgcaccgctctaacagttttt
gtggaaggctccaggtgtgggactgagggatttataagaacaagtaaacagtcacatgta
gtgtcaaacagcaatcaggccgagggtgaacctgtaggtgaatag
DBGET
integrated database retrieval system
