Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422441
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Entry
139422441 CDS
T10872
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139422441
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139422441
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
139422441
NCBI-ProteinID:
XP_071029718
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All DBs
Position
12:complement(30466988..30473653)
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AA seq
1142 aa
AA seq
DB search
MENLTPEQWREIVNKKMRFPLELISAIQEGNIVMVCGLLNTGDGIIRQLDDSEDRLWREA
LNLSIRLGNEETMDALLQGIKFDFRQIHEALLVAVDTNQPRVVKRLLDRLDQEKGNKMDV
RSFSLAIFDHSIDDSQFAPGVTPLTLACQKDLYEIVTMLTQKGHIIPRPHKISCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSEDAMLSAFGLSRELRKLSKKEPEFKPQYL
GLEELCQEFAVELLGMCRNQSEVTTILNSCGDESQDALDQQAFEEGIPNLTRLRLAVNRN
QKQFVAHPICQQVLSSIWCGNLSGWRGSKTAWKLLVSVGIFFTMPLLCLVYWIAPKSKVG
KILKIPVIKFLLHSASYMWFLITLLGESITMELYRDQFASRQQNILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCMDMMVLSMYLASFTLRVLIMLKGHFLCQAPDGTEECAYF
TQTVRQDWHQEDPQLIAEVLFAVTSMLSFTRLAYILPAQESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNIYVPYVTQPYLGRFNETFRFLFWTMFGVANQDYVDMPEFVVAEF
VGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAFFYLIRGIFRQICCCCTLNSTPDYPPITSMSNGKEVDGGGSGENQIPYRQ
QVIRALVQRYIESERRKFEETKRKDVGNRITELNKVVGRLHAEMKAIMQVLVDSGQAAGD
IPNTDGSSILGKYIMGAKNNFRGFDNRLDNKHTPLRVTVEVGQQGKVAEEKAGAVVMLDD
KGMEVEHDRKVEIEKDGRTAMGLDKKVEMEEEAKDGGMVVKQEVKVDVGLDGAEGTKQVG
DMDVVKMEEGRADGRKGERRVEEVVKESEQNMENGGKGEVRVEEMVKETEHEMERRGNSD
GKGEKGINKARTNEMVEGEASKAEVRMEVKDKGKKVDSSVDNTIRDKGVVGGDKTVNEMG
GCGNEGKVDMGLEDVKEVERKVKAMELKEKRVVGKINVAERWNKGEGRTVEENVTERKAA
KAGMVVVENTARAGVNILGEKVVPSPTGSSSSQDTGFGSQEGEGSINGGPMRPAYLSASS
PD
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctcacaccggagcaatggcgggagatagtgaacaagaagatgcgcttccct
ctggagctgatcagtgccatccaggaggggaacatagtgatggtgtgtggcctgctgaat
actggtgacggtatcatccgccagctggacgactccgaggaccggctgtggagagaggcc
ctgaacctgtccatccgcctgggcaacgaggagaccatggacgccctcctccagggcatc
aagtttgactttcgccagatccatgaagctctgctggttgccgtggacaccaaccagccc
cgcgtggtgaaaaggctcctcgaccgcctggaccaggagaagggcaacaagatggatgtg
cgatccttctccctggccatcttcgaccactctatcgacgactcgcagttcgccccaggc
gtgaccccgctgaccctggcctgtcagaaggacctgtatgagattgtcaccatgctgacc
cagaagggccacatcatcccacggccacacaagatctcctgtgcctgtctagagtgtagg
aacgggcgacagtatgacctgctgaagttctccctgtctcgcatcaacacctaccgtggc
attgccagccgggcctacctgtccatcacctcagaggacgccatgctcagtgccttcggc
ctcagcagggagctacgcaaactctccaagaaggaacccgagttcaagcctcagtacttg
ggtctggaggagctgtgccaggagtttgcggtggagctgctggggatgtgccgtaaccag
agtgaggtcaccaccatcctgaacagctgtggagatgaaagccaggacgcccttgaccag
caggccttcgaggagggcatccccaacctgacccgcctgaggcttgccgtcaaccgcaac
caaaaacagtttgtagcccaccctatctgccagcaggtgctgtcttctatttggtgtggg
aacctgtctggctggagaggcagcaagacggcctggaagctgctggtgtctgtggggatc
ttcttcaccatgcccctcctctgcctcgtctactggattgcacccaagtccaaggtggga
aagatactgaagattccggtgatcaagttccttcttcactctgcctcctacatgtggttc
ctcatcacattgttgggagagtccatcaccatggagttgtacagagatcagtttgcttcg
cgtcagcagaatattctgcacagctcattccacatggtgtgggtggtcgggttcttctgg
tatgaatgtaaggaggtgtggattgaaggtctgcggagctactttctggactggtggaac
tgcatggacatgatggtgctcagcatgtacttggcctccttcactctgcgtgtcctcatc
atgctcaaaggtcacttcctgtgccaggcccctgacgggactgaggagtgtgcctacttc
acccagactgtgcgccaggactggcatcaggaggacccccagctcatagctgaggtactg
tttgcagtgaccagtatgctgagcttcacccgcttggcctacatcctgcctgcacaggag
tccctgggtacactccagatctccatagggaagatgatcgatgacatgatgaggttcatg
ttcatattgatgataattggaactgctttcctctgtggtatcaataacatctatgttcct
tatgtcacccaaccatatcttggaaggtttaacgagacctttcgtttcctgttctggacc
atgtttggggtggccaaccaggactatgtggacatgcccgagtttgtggttgcagagttt
gtgggcagaatcctttacggcatcttcaccctggtgattgtgatcgtgctactcaacatg
ctcattgcaatgatcaccaactccttccagaagattgaggatgatgctgacgttgagtgg
aaatttgcccgatccaagctctatctgagttacttccgagaaggtctcactatgcctgtc
cccttcaacatcatcccctcacctaaggcctttttctacctcatacggggtatttttcgt
cagatctgctgctgttgtactttgaactcgacaccagactatccccccataacctccatg
tcgaacgggaaggaggtggatggtggagggtcgggggagaaccagataccttatcgccag
caggtgatacgggctctggtgcagcgctacattgagtctgaacgtcggaagtttgaggag
accaagagaaaagatgtgggtaatcggatcacagagctaaacaaggtggtgggcaggctg
catgctgagatgaaggccatcatgcaggttctggtggactctggccaggctgcaggagac
atccccaacactgatggctcctccatcctggggaaatacataatgggagccaagaacaac
ttcagggggttcgacaacaggctggacaacaaacacacacctctacgggtgactgtggag
gtgggacaacagggaaaagtagcagaagagaaggctggagcagtggtgatgctagatgac
aaagggatggaggtggaacacgacagaaaggtggagatagaaaaggatggaaggacagca
atgggactagacaaaaaagtggagatggaagaggaggcaaaggatggagggatggtggtc
aaacaggaagtaaaggtggatgtggggctagatggagcagaggggacgaaacaggtagga
gacatggatgttgtgaagatggaggaggggagagctgatggaaggaagggagagagaagg
gtggaggaggtagtgaaggagtcagagcagaacatggaaaatggaggaaagggagaggta
agagtggaagaaatggtaaaggagacagagcacgagatggaaaggagaggcaacagtgac
gggaagggggagaaggggataaataaggcacgcaccaatgagatggtggagggagaggcc
agtaaggcagaagtaaggatggaagtgaaagacaaagggaaaaaggtagatagcagtgtg
gataatacaatcagggacaaaggagttgtgggaggtgacaaaacagttaatgaaatggga
ggatgtgggaatgaaggtaaagtagacatgggattggaagatgtgaaagaggtagagagg
aaggtcaaagcgatggaactaaaggagaaaagagtggtggggaagatcaacgtggcagag
aggtggaataagggggaggggaggacagtcgaggagaatgtgactgagaggaaggctgcc
aaggctggcatggtggtggtggagaatactgccagggctggggtgaatatcctgggggag
aaggtggttccttccccgaccggcagcagcagctcacaggacactggcttcggctcacaa
gaaggggaggggtccatcaatggaggaccaatgagacccgcatatctgagtgcatcatct
ccagattag
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