Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422467
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Entry
139422467 CDS
T10872
Name
(RefSeq) 5-hydroxytryptamine receptor 3B-like
KO
K04819
5-hydroxytryptamine receptor 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139422467
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139422467
Ion channels [BR:
ocla04040
]
Ligand-gated channels
Serotonin (5-HT3)
139422467
SSDB
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
139422467
NCBI-ProteinID:
XP_071029737
LinkDB
All DBs
Position
12:40653166..40660480
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AA seq
454 aa
AA seq
DB search
MIDLLLDFHSAPLAEQVADKPKRSALNQLTRTLLRKYDCGVRPVQNWTRPTLIHIDLILQ
SVLDVDGKTQQVTTSIWYRQIWTDEFLVWDPEEFDGITEISLSSDAIWVPDLIISEFVDV
GESPAIPYVYVNSSGMVKNNKPIQVVSACDLELYAFPFDKQNCTLTFRSWLHSVKEVNLT
LWRSAEEIANDQKSFMDDGEWELLSVPSRYWHLRLDDRDYAHIQFNVLIRRRPLLYVVSL
LIPSIFLMVVDVISFYLPPNSGTRITFKTSILLGYTVFRVNLMNEMPATTIRTPLIGVFF
AVCMALLVLNLSISIFVVKLLHHNEKEVKEMSVSACLLDKYGSSSQTFLESNFTSVKTLV
DVDQCGGYEFDLAPEEDILSLSELQESAPRLERLLQEVVALRLYLQEGESDDLAQADWVA
LCCKVDILLFRVYLFILVVYTSTLLLLWASWSSA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgattgatttactacttgacttccattcagcccctctagctgaacaggtagcagataaa
cccaagaggtctgctctgaaccagctcaccaggaccctcctgcgtaaatacgactgtgga
gtgagacctgttcagaactggaccagacccacgctaatccacatagacctcatactgcag
tcggtccttgatgtggatggaaagacccagcaagtaaccacaagcatttggtaccggcag
atctggaccgatgagttcctggtgtgggaccccgaggagtttgacgggatcactgagatc
tccctgtcctctgatgctatatgggtgcccgatctcatcatcagtgaatttgtggatgta
ggggagtcccctgccatcccctatgtgtatgtcaactcgtccgggatggtgaagaacaac
aaacccatccaggtggtgtctgcatgtgacctggagctgtacgccttccctttcgataag
cagaactgcactctgaccttccgcagctggcttcactcagtgaaggaggtgaacctgaca
ctgtggaggagtgcggaggagatcgcaaatgatcagaagtcatttatggacgatggcgag
tgggaactgttgtctgtgccctcccgctactggcatctccgcctggacgacagagactac
gcccacatccagttcaacgtgttgatccgccggcgccccctgctgtacgtggtgagtctg
ctcatccccagcatcttcctcatggtggtggacgtcatcagcttctatctgccgcccaac
agtggcacccgtatcacctttaagaccagcatcctcctgggctacactgtcttcagggtc
aacctgatgaacgagatgcctgccaccaccatcagaacaccactcataggtgtgttcttt
gcggtctgcatggcgctgcttgtgctgaatttatccatctccatctttgtggtgaagctc
ctccaccacaacgagaaggaggtcaaggagatgtcagtgtccgcctgcctcctcgacaag
tacggctcgtccagccagaccttcctcgagagcaacttcacctctgtcaaaacgctggtt
gacgtggatcagtgtgggggctatgagtttgacctggctccagaggaggacatactgtcc
ctgagcgagcttcaggagagtgctccacggctggagaggctgctccaggaggtggtggcc
ctgcggctctacctgcaagaaggggagagtgacgatttggcccaggccgactgggtggcc
ctctgctgcaaggtggacatccttcttttccgagtctacctgttcatcctggttgtctac
accagcactctgctgctactgtgggccagctggagctctgcatga
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