Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422511
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Entry
139422511 CDS
T10872
Name
(RefSeq) interferon a3-like
KO
K05414
interferon alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
ocla04217
Necroptosis
ocla04620
Toll-like receptor signaling pathway
ocla04621
NOD-like receptor signaling pathway
ocla04622
RIG-I-like receptor signaling pathway
ocla04623
Cytosolic DNA-sensing pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139422511
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139422511
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139422511
04621 NOD-like receptor signaling pathway
139422511
04622 RIG-I-like receptor signaling pathway
139422511
04623 Cytosolic DNA-sensing pathway
139422511
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139422511
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ocla04052
]
139422511
Cytokines and neuropeptides [BR:
ocla04052
]
Cytokines
Interferons
139422511
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Interferon
RP853
Motif
Other DBs
NCBI-GeneID:
139422511
NCBI-ProteinID:
XP_071029770
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Position
12:complement(66627643..66630713)
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AA seq
188 aa
AA seq
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MYTMQSWTCIVLIICSMQSVCHCCDWIRHHYGHLSAEYLSLLDQMRYQETLSTLGLLYCK
VRFRNEAIYKITKLFDGNMKSVTWNKKNLDDFLKILENQFENLNSCKNSQKKRDQMNILH
LHDAKVLFHFVRHVSPAMKPERRLKRYFKKLNRKVLRKMVSLISTTVLIRKEMKRHLQIL
DILVAQLY
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaatgcagagctggacttgtattgttcttattatttgcagtatgcagagcgtg
tgtcattgctgtgactggatccgacaccactacggtcacttgagcgcagaatacctttcc
ctgctggaccagatgagatatcaagagacgctatctacattaggcctactgtactgtaaa
gtcagattccggaacgaggccatctataaaatcacaaaactgtttgatgggaatatgaag
tccgtcacctggaacaagaaaaacctggacgatttcctcaaaattctagaaaaccaattt
gagaaccttaattcctgcaaaaattctcagaaaaaaagggatcaaatgaatatactacat
ctgcatgatgctaaagtattgtttcattttgtccgacatgtatcacctgccatgaaacct
gagaggagactgaagcggtacttcaagaagttgaataggaaggttctgagaaaaatggtg
agtttgatttcaactacagtgctcatcaggaaagagatgaaacgtcatctgcaaatattg
gatatccttgtggcacaattgtactga
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