Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422628
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Entry
139422628 CDS
T10872
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139422628
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139422628
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
NOD2_WH
SPRY
LRR_6
PYRIN
LRR_4
Motif
Other DBs
NCBI-GeneID:
139422628
NCBI-ProteinID:
XP_071029875
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All DBs
Position
12:100122464..100130957
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AA seq
1009 aa
AA seq
DB search
LSGQSSQSHQTDLASIFSLLEEKIMTFVKNELKMFKRILSPELPEGFESQKQDKEVVDAE
DEKQESSAREGALKITLHILRKMNQKELADTLEKCKIYELAVICQREIKSNLKKKFQCVF
EGIAKQGNPTLLNKIYTELYITEGGTGEVNNEHELRQIETTTRKQARPETAVKCNDIFKP
LTGQDKPIRTVLTKGVAGIGKTVSVQKFILDWAEGKANQDVQFVFSFPFRVLNLMKEDKH
TLIELLNHFSMETKQSRISNYDKYKVLFIFDGLDECRLPLDFQKNKICCDVTESTSVDVL
LTNLIKGNLLPSALLWITTRPAAANKIPSGCVNQVTEVRGFNDPQKEEYFRKRFSAEDLA
SRIISHIKTSRSLHIMCHIPVFCWISATVLEHMLKHKIEEMPKTLTEMYTHLVEFYTKQK
NEKYLGKEETGPHWNKESILSLGKLAFQQLVNGNLIFYEEDLKEAGIDVNEASVYSGLCT
QLFKEECGLYQDTVYCFVHLSIQEFLAAVYVFLSFINNNENLMAEPQSTSRKLSVLFRDK
PKVTFYKPEVTVYKSAVDKALQSETGNLDLFLRFLLGLSLESNQKHLRGLLTKTRSSSKT
HGETVKYIKEKIRENPSPERSINLFHCLNELNDHSLVEEIQSFLSSGSLSKPNLSPAQWS
ALVFVLLTSEKELDVFDLKKYSRSEEGLLRLLPVVKASRAVLLSGCGVTEEGCASLVSAL
RSNPSHLRELDLSNNDLKDSGVKLLSAGLGNPHCKLETLRLSGCLVTEEGCASLVSALRS
NPSHLRELDLSYNHPGDSGVRQLSARLEDPHCRLEKLNVEHGGENTMKPGLRKYVCDLTL
DPNTVHRHLSLSEENRKVTCRREKQPYPDHPERFEDWEQVLCREGLTGRCYWEAEWSGSG
AGIGVTYKGINRRGGIDCYLGYNDKSWSLNCSDNSYIAWHNNKPTTIDVCPSSSHRVGVY
LDWPAGTLSFYRASSDTLTHLITFTSTFTEPLYPGFRLWDDGDSVSLCQ
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
ctcagtggtcagtcttcccagagtcatcaaacagacctggcctccatattcagtttgctt
gaagagaaaattatgacatttgtgaagaacgagctgaagatgttcaagaggattcttagt
ccagaactcccagaaggctttgagagtcagaagcaggataaggaagtggtggatgctgaa
gatgagaagcaggagagcagtgccagagagggggctctgaagatcacactgcacatcctg
aggaaaatgaaccagaaggagcttgctgacacactggagaaatgtaagatctatgagctt
gctgttatttgccaacgtgaaatcaaatctaatctaaagaagaagtttcaatgtgtattt
gaggggatcgctaaacaaggaaacccaacacttctcaataagatctacacagagctctac
atcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagaca
acaaccaggaaacaagcaagaccagagactgcagtcaaatgtaacgacatcttcaaaccc
ttaactggacaagacaaacctatcagaactgtgctgacaaagggagtcgctggcattgga
aaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggat
gtccaatttgtattttcattcccttttcgggtgctgaatttgatgaaagaggacaaacac
actttgattgaacttcttaatcacttctcaatggaaaccaaacaatcaagaatctccaac
tacgacaagtacaaagttctgtttatctttgatggtctggatgagtgccgactgccccta
gacttccagaagaacaagatctgttgtgacgtcacagagtcaacctcagtggatgttctg
ctgacaaatctcatcaagggaaatctgcttccctctgctctcctctggataactacccga
cctgctgcagccaataagatcccttcaggttgtgttaaccaggtgacagaggtacgaggg
tttaatgacccacagaaggaggagtacttcaggaagagattcagtgccgaggacctggcc
agcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattcca
gtcttctgttggatttctgcaacagtccttgaacacatgctgaaacataagatagaagag
atgcccaagactctgactgagatgtacacacaccttgtggagttttataccaagcagaag
aatgaaaagtatcttgggaaagaagagacaggtccacactggaataaagagagcattctg
tcactgggaaaactggcttttcaacagcttgtgaatggcaatctgattttctatgaagaa
gacctgaaggaggctggcattgatgtcaatgaagcctcagtgtactcaggattgtgcaca
cagctctttaaagaggaatgtgggctgtaccaggacacggtgtactgctttgttcatctg
agcattcaggagtttctggctgctgtatatgtgttcctctcattcatcaacaacaatgag
aatctaatggccgaaccgcaatcaacatccaggaaactttctgtgctgttcagagacaag
cctaaagttactttctacaagcctgaagttactgtctacaagagtgctgtggataaagcc
ttacaaagtgagacgggaaacctggaccttttcctccgcttccttctgggcctctcactg
gagtccaatcagaaacacttacgaggtctactgacaaagacaagaagcagctcaaagacc
catggagaaacagtcaagtacatcaaggagaagatcagggagaatccctctccagagagg
agcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatc
caaagcttcctgagctcaggaagtctctcaaaacccaacctatcacctgcacagtggtca
gctctggtctttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaa
tactccagatcagaggaaggtcttctgaggctgctgccagtggtcaaagcctccagagct
gttctgctgtcaggctgtggagtcacagaggaaggctgtgcttctctggtctcagccctg
aggtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattca
ggagtgaagctgctctctgctggactggggaatccccactgtaaactggagactctgagg
ctgtcaggctgtctagtcacagaggaaggctgtgcttctctggtctcagctctgaggtca
aacccatcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtc
agacagctctctgctagactggaggatccacactgcagactggagaaactcaatgtggaa
catggtggagagaacacaatgaaacctggacttagaaaatatgtctgtgatctcacactg
gacccaaacacagtacacagacacctctctctgtctgaggagaacagaaaggtgacatgt
aggagagagaaacagccgtatcctgatcacccagagagatttgaggactgggaacaggtg
ctgtgtagagagggtctgactgggcgctgttattgggaggcagagtggagtgggagtggg
gctggaataggagtgacatataaaggaatcaacaggagaggaggtattgactgttatctt
ggatacaatgacaagtcctggagcctgaactgctctgacaacagttacattgcctggcac
aataataaacctactaccatagacgtctgcccctccagctcccacagagtaggagtgtat
ctggactggccagccggcactctgtccttctatagagcctcctctgacacactgacccac
ctgatcacattcacctccacattcactgagcccctctatccagggtttaggctttgggat
gatggcgactcagtgtctctctgtcagtga
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