Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422674
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Entry
139422674 CDS
T10872
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
139422674
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Gene cluster
GFIT
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NCBI-GeneID:
139422674
NCBI-ProteinID:
XP_071029972
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Position
12:8802038..8815954
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AA seq
1077 aa
AA seq
DB search
MDYIFPRKLFPVYFNSGPPSSTFRHNVGGWGSYGQVLDVNVPLHEKDSLPKVDWKFESQH
QVKGEPWVPVEPIAIPLLRPKRGPKWSSTALSDPMDFSEHMQNFYQYKYKDAFCTMSHIL
GDKFNFGQGRRKGSEINAVHMWQMEHFMHTFKYKKCELTHFGRQAKRYHNLLSDVIHDIP
PALLADHLHEELTYQRGQEQFSDHATGGAMGYISFTNTSISQQGCLVYPGKAGLSKLNFH
RVVLEFQEGKPPCFDVSHKPLSFQLNGTIRQITIGLQQDECHVGVRCDHLCGVWMVSEKN
IAKSLEVIQTKQPATCLSASPHVQGELLVASESGAAYLWTVGKGLQKFRQEYSNLYFNSK
SSWRWCDFSGHPRVMVYADRTGVELTDIRTKDSCSHTLFRIGQTPDCKSGERVILSNYLR
DVHTFHHLVTTQHSAYVMDERFPCLPMIQWDHMMEHPPMFSQVVAGLPSGGGTTKVLLGS
QRSQEVILLQYSGGREEACVTRGPPRALLSPRDSLGHLPVQLPHRQHHAQDRLANPAAGL
TVIHQSRAKEDCICVLQLTEAGDIFYHTLKSQTECFSKDDPPAPTQNSVGPEGRSGDDQR
LKQPVDTLRKQLHQTLGTPRSSTLDETWYSSGPPSPEGDSGFEGRGQPWDTPRAGLEIVI
NDPHDDPYPWLATNTGLTDTQETTAVVPPPTAQSLATNINPVRPKAKVSDEALLVWRKWF
LKLFKCSWERRNLPHKTTKTKDLLPDDSLQRDPLEDHCRRTLRKDLRETMRNGNVLVHRN
TCLKPLALVPVPAPVEPSEWADVLSERMSASWEPGLGGWRSWWEERLGLNREEKVEALRR
KRRRQKRAKAHSRIDLSGSFTSSVSYQSDLDSASLSGWSSAASQYASSDVDSVPTSRDYT
KWVTLSEPGTPRATTPTPQTSSSQPTTPRREFGSKPTTPLDQLSSFLSQPTVPSSQFISS
SLPTVPHTKPLFTPKKQPTIGKSSPWTTAGSDSSAADILRTVVATQKPKPQNQDYLNSLF
GSQEPMDVSQGVGFNESRQNTPLATSSQLSSISSSQRNLKVGLTSSQPKRKKSRMGF
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggattacattttcccacggaaacttttcccggtttatttcaactctgggccccccagt
tctacgtttagacataacgtcggaggttggggttcctatggtcaagtgttggacgtaaac
gtccctctacacgagaaagacagtctaccaaaagtagattggaagtttgaatctcaacac
caagtgaagggagagccttgggtgccagtggaacctatagcaataccacttctgcgacca
aaaagaggccccaaatggtcatcaacagctctgtcagatcctatggacttctcagagcat
atgcagaacttctaccagtataagtacaaggatgctttttgcacaatgagccatatcctg
ggggacaaattcaactttggacaggggaggagaaagggaagtgaaataaatgctgttcac
atgtggcagatggagcacttcatgcacacatttaaatacaaaaagtgcgagttaactcat
tttggacggcaggccaaaaggtaccacaacctgttatcagatgtgatccatgacatccct
ccagcactgctagctgatcatctccatgaggagctgacctatcagagagggcaggagcag
ttctctgaccacgccacagggggtgccatggggtacatttcctttacaaacaccagtatc
tctcagcaaggctgtctggtgtaccctgggaaagctggcctaagcaagcttaacttccac
agggtggtgctagagttccaagaagggaagcctccatgttttgatgtgagccacaagcct
ctctcattccagctcaatggtacaatcagacagatcaccatcggccttcagcaggatgaa
tgtcacgtgggggtgcgctgtgaccacctgtgtggtgtctggatggtcagtgagaagaac
atcgctaagtctctggaggtcattcagaccaagcagcctgctacatgtctcagtgccagt
ccccatgtccagggagagcttctggtggccagtgagagtggagctgcctatctatggaca
gtgggcaaaggtttacagaagttccgtcaggagtacagtaacctgtacttcaattctaag
tcgtcatggagatggtgtgacttctctggccaccccagggtgatggtgtatgctgaccgg
acaggtgtggagctcactgatatcaggaccaaagatagttgtagccacacgctgtttcgt
atcggccaaacacctgactgtaagagtggagagagagtcatcctgtccaattacctgaga
gatgtccacactttccaccacctcgtcaccacacagcactctgcttacgtcatggatgag
cgtttcccctgcctccccatgatccagtgggatcacatgatggagcatcctcccatgttt
tcccaggtcgtggcggggttgccgtcggggggcgggactaccaaggtgctgctgggctct
cagagatcacaggaagtgatcctgctacagtactcgggtggtagggaggaggcctgcgtc
accagaggcccacctcgggccttgctcagccccagagacagccttggacacctgcctgtc
caactcccccacagacagcaccatgctcaggacagactagccaatcctgctgctggtctt
actgtgatccatcagagccgagccaaggaggactgtatctgtgtgctgcaactcactgag
gccggagacatcttttaccacacgctaaagtcccagactgagtgcttcagtaaagacgac
ccaccggcaccaacccagaactccgtgggacccgagggccgtagcggagatgaccagaga
ctaaaacaaccagttgatacgttaagaaaacagctgcatcaaacgttaggaaccccaaga
agcagtaccttagatgagacatggtattcctctggaccgccgtctcctgagggtgactct
gggtttgagggtagggggcagccgtgggacactcctagggctggactggagatagttatc
aacgaccctcatgacgacccgtacccgtggctagcaacaaacacaggattaactgatact
caggaaaccactgctgtagttcctccacctacagcccagtctttggccactaacattaac
cctgtcaggccaaaggctaaagttagtgatgaggctctgttggtttggaggaagtggttc
ctcaaactgttcaagtgctcctgggagcgccgcaatctcccacacaagaccacaaaaacc
aaggatcttctacccgacgacagccttcagagagacccgttggaagatcactgtcgtcgg
accctgaggaaggacctgagggagaccatgaggaatggaaatgtcctcgtccacaggaac
acctgtctcaaacccctggctctggtccctgtcccggcacccgtggagccttctgagtgg
gctgatgtgctgagcgagaggatgagtgcatcgtgggagcctgggctggggggatggagg
agctggtgggaggagaggctggggctgaaccgagaggagaaggtggaggctctgcggagg
aagaggaggagacagaaacgggcaaaggctcacagtcgtatcgacctatcaggcagcttc
acctcgtccgtcagctaccaatcagacctggacagcgcttctctctccggttggtcgtcg
gcagccagtcagtacgccagctccgatgtagacagtgtgccaacaagccgcgactacacc
aagtgggtcaccctgtctgagccgggtacaccgagggctaccacaccaacgccacagacc
agtagctcacagcccacaacacctcgtagggagtttggttcaaaaccaactacaccactg
gatcagcttagtagtttcctctcccagcccactgtcccctcttcacagttcattagtagt
tcactgccaactgtcccccatacaaagccactgtttacacccaaaaaacagcccaccatt
ggtaagtcgtcgccctggacaacagcaggttctgactccagcgcggcggacattttgaga
acggtggtggcaacccagaagcccaagccacagaatcaggattatttaaattctctcttt
ggatcccaggagcctatggatgtctcacagggagtaggatttaacgagagcagacagaat
actcctttggccacctcttctcagctgtcctccatctcttcttcacagaggaacctgaaa
gtgggactaacctcctcacaacccaaaaggaagaagtctcgtatgggtttctga
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