Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422736
Help
Entry
139422736 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139422736
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139422736
mRNA degradation factors
5'-3' decay
Decapping complex
139422736
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139422736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139422736
NCBI-ProteinID:
XP_071030151
LinkDB
All DBs
Position
2:complement(15844376..15859045)
Genome browser
AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTPGSLATTPQPDAHQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacagagaacccaacatccataatgggactgaacaagcccaacggg
cagtttagaggaccactcaagccagttggactaacaccaggatccctggcaactacccca
caaccagatgcccaccagaagggaggcaacattccccagggcagtgggggcatccgtttt
ggcgatgactggaagaagtgcctgcagcttccacagaaggactgcagatttagaacatca
gatgtgacatcgaccaagggaaatgagttcgaagactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgccagggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctacacgagagttggccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacgggaggcaccaacctgagggacgac
atcatgcgcctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggcgtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggttctcatcgaagacatcatcagctttctggct
aaggggcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgacactgaagggc
atcacccagtactatgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccatcatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccatgccaagatg
atgcaggagtacagaaaccgtgtgttccatgacttcagaaacggactctgcaggaacttg
gtctgcacagatctgttcaccaggggaattgacatccaagcagtgaacgtagtgatcaac
tttgacttccccaagaatgctgagacgtacttgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgcttcaacctgaagtcc
atcgaggaccagctggtgaccgacattaagcccatccccggcagcatcgacaagggcctg
tacgtggcggagttccactctgccgacccagacgcagaagacgagatcagaggcaaggac
ggcgagttaagcgcagcataa
DBGET
integrated database retrieval system
