KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422739
Entry
139422739         CDS       T10872                                 
Name
(RefSeq) roquin-2-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139422739
   04121 Ubiquitin system [BR:ocla04121]
    139422739
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    139422739
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139422739
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-RING_2 zf-CCCH_4 zf-C3HC4_3 zf_CCCH_4 Prok-RING_4 zf-CCCH_UNK zf-C3HC4 zf-RING_4 zf-C3HC4_4
Other DBs
NCBI-GeneID: 139422739
NCBI-ProteinID: XP_071030155
LinkDB
Position
12:complement(14478784..14527608)
AA seq 1225 aa
MPVQAAQWTEFLSCPICYNEFDSSGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAINTD
IDLLPVNSALLQLVGAQAVESQAVTLSSAVEVGHYEVCRVCVEELALYLKPISGGKGVVT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRLRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPATQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRAYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAAAAPWWEELESVMLAVKVVVQGLVEFIHNFNRKSHETAQPQPNSKYKTSICRDL
RQQGGCPRGSNCTFAHTQDELEKNRMRNKKISGVGRPFLLAQGSMGSGLSMEGGDSGEEA
CTGGLKSSDNEGSGSLKEGATPSQLMPRGGDMMEEMKRERSVLNGSTGSSRSSSGSMEQK
SISPPKTPVNSSSAPSPYGPGSRLECDSAHPKQTQYLMIRPLPQPPPHQPQSSELCYQDP
RPPYDVQPYQPASNYYPSAIHHHKPCVARFFRSSHVPESSMPPSMAPLYSEQYPSLPPPR
EHAGPSPYGPPSVPQYRPLAPAHGGYAPLYDSRHMWRPQLYHREDARSNSLPPEVLHSSV
YQSPLRERYASLDSPYCSAGEHRAALHRNSYGRFPLGCEDLFRRKQEQWAHHHHGNVNRP
SQSSPVFTVDFGAEHDDGGGGQCMNCKFRGEENLSHYSPWSCGTISTCISPFEPEHHKAS
AHSRSENLEVHNGERTRWLHTFEPYRRLKDEDPSIPFETYRRLKYEDPSIPFETYRRLKD
EDPSIPFETYRRLKDEDPSIPFETYRRLKDEDPSIPFETYRRLKDEDPSIPFETYRRLKD
EDPSIPFETYRRLKDEDPSIPFEPYRRLKDEDHSIPFGEGPIIPFGEGPIISKWGAISRA
SRTGYHTTDPVQATACQGSNSTIPINFRDYGPHIGHGDYRWSSGGSDSSSHSSFLEGEQL
AALRRSFSSGEKAGAGDMLQTDYCKDTTEHQLDRDVELELSVLDVENTVPQDNSQQSEKP
LELREPHLLTPPSSEPQRTQTDKLSADKMEAQLLKKMAFRRSLSPGGLGSGGLSVGKLMM
RTGPLRLGDMGPCPNTGPEMLLNGN
NT seq 3678 nt   +upstreamnt  +downstreamnt
atgccagtgcaggcggcccagtggacagagttcctctcctgccccatctgctacaacgag
ttcgacagcagtggccacaagcccatcagtctgggctgctcgcacactgtgtgtaagacc
tgtctccacaagctgcaccgcaaggcctgtccgttcgaccagacagccatcaacactgac
atcgacctcctgccagtcaacagtgccctgctacagctggtgggagctcaggctgtggag
tcccaggctgtgactctgagcagtgctgtggaggtagggcactatgaggtgtgcagggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgacc
ctcagtccgagcgtgctcagtcggcccatgcagaggaagctggtgacactcgtcaactgt
cagctggtggaggaggaggggcggttgcgggcggtgcgggcgggcaggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgctaacctg
tgggccgccgtcagagcacggggatgccagttcctggggcctgccacgcaagaggatgct
ctgaagctggtactgttggcgctagaggacggctcagctctgtccaggaaagttcttgtc
ctttttgtggtccagaagctggaggctcggttccctcaggcctccaaaacctccatagga
catgtggtccagctactctacagggcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgctgatgcagctaaaggaggagttccgtgcgtacgaggcgctgcgtcgcgagcat
gacgcccagatcgtacacatcgccatggaggcggggctccgtatctcccctgaacagtgg
tcctctctgctctatggagacctcatccacaagtcacacatgcagtctatcatcgataag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagacccagccaatctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagatgcagcggcggctccgtggtgggaggagctggagagtgtgatgctg
gcggtgaaggtggtcgttcaaggtctggttgagtttatacacaacttcaataggaagagc
catgagacagcacagccgcagcccaacagcaaatataagaccagtatctgtcgagacctc
cggcagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaagacgag
ctagagaagaacagaatgagaaacaagaagatcagtggcgtgggccggcccttcctcctg
gcccaggggagtatgggtagtggtctgagtatggaggggggcgactcaggagaggaggcc
tgcactgggggcctgaagagctcagacaatgaggggtcaggatccctaaaggagggggcc
acaccctcccagctcatgcccaggggaggggatatgatggaggagatgaagagggagagg
tctgtacttaacggatccacaggctccagccgatcctcatctggctctatggaacagaag
tctatttctcctccaaagacaccggtcaattcctcctcagctccttctccctatggccca
gggtctagactagagtgtgactctgcacaccccaaacagacccagtacctaatgataaga
ccccttcctcagccccctccccaccaacctcagtcctctgaactgtgttaccaggaccca
cgacctccctacgacgtgcagccctaccagccagccagtaactactacccctctgcgata
caccaccacaaaccctgcgtggctcgcttcttccgttccagccacgtcccagagtcctct
atgcctccctccatggcccctctgtactcagagcagtacccctccttgcccccaccacgg
gagcacgctggtccctctccctacggtcccccatcggtcccccagtacaggcctctggcc
ccagcccacggtggctacgctcccctgtatgacagccggcatatgtggaggccccagctg
taccaccgtgaggacgccaggagtaactcgctgcctcccgaggtgctgcactcctctgtg
taccagtccccccttcgagagagatacgcctccctggacagcccctactgctcagcgggg
gagcacagagcagcactgcacaggaactcttatgggcgttttcctcttggatgcgaggat
ctgttcaggcggaaacaggagcagtgggcacaccatcaccacggcaacgtgaacaggccc
tcccagtcctcccccgtcttcaccgtagactttggtgcagagcatgatgacggtggtggt
ggtcagtgtatgaactgtaagttccgtggagaggagaatctgtcccactactctccctgg
tcctgtggaaccatcagtacctgcatcagcccctttgaaccagagcatcacaaggcctca
gctcactcccgctccgaaaacttagaagtacacaatggtgaaaggacgcggtggctacac
acgtttgagccctaccgccgtctgaaagacgaggaccccagcataccgtttgaaacctac
cgccgtctgaaatacgaggaccccagcataccgtttgaaacctaccgccgtctgaaagac
gaggaccccagcataccgtttgaaacctaccgccgtctgaaagacgaggaccccagcata
ccgtttgaaacctaccgccgtctgaaagacgaggaccccagcataccgtttgaaacctac
cgccgtctgaaagacgaggaccccagcataccgtttgaaacctaccgccgtctgaaagac
gaggaccccagcataccgtttgaaacctaccgccgtctgaaagacgaggaccccagcata
ccgtttgagccctaccgccgtctgaaagacgaggaccacagcataccgtttggagagggg
cccatcataccgtttggagaagggccgatcatctccaaatggggggcgatatcccgcgcc
tcccgtacaggataccacaccaccgacccggtccaggccacagcctgccagggaagcaac
agcaccatccccatcaacttcagagattatggtccacacatcggccatggggactacagg
tggagctccggggggtctgactcttccagccactccagtttcctagagggtgaacagcta
gccgcccttcggcggtccttcagcagtggagagaaggctggtgcaggagacatgctgcag
actgactactgtaaagacacgacagagcatcaactggacagagacgtagaactggagctg
tctgtactagacgtagagaacactgtcccgcaggacaacagtcaacagtctgagaagccc
ctggagctgagagagccccacctcctcacccctcccagcagtgaaccccagaggacacag
acagacaagctgtcagcagacaagatggaagctcaactgctgaagaagatggccttcagg
aggtctctctcccctggaggtctgggctcaggaggcctcagcgtggggaagctgatgatg
aggaccggccctctgagactgggggacatgggcccttgccctaacacaggccctgagatg
ctgctcaatgggaactga

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