Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422752
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Entry
139422752 CDS
T10872
Name
(RefSeq) integrin alpha-1-like isoform X1
KO
K06480
integrin alpha 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139422752
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139422752
CD molecules [BR:
ocla04090
]
Proteins
139422752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139422752
NCBI-ProteinID:
XP_071030174
LinkDB
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Position
12:complement(15004110..15090114)
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AA seq
1188 aa
AA seq
DB search
MLRQMQYLKLATALVLLSCVSSFNVDDKNGETFNGPLEDMFGYSVQQFENSEGKWVLIGS
PLAGQPAKRTGDVYKCRVGQGPNPRCIKLELPENTTIPNLHEVKENMTMGTTLVTNPQGG
FLACGPQYGYMCGQQTYISGVCTNVSSTFQVLNSIAPAVQECAKELDIVMVLDGSNSIWP
WTSIIDFLVKFLKNIEIGAKLSQVGIVSYGEEVTHNVNLSQFDTTQSLLAKVAKLPQQTG
FKTMTALGIDTARKEAFTVERGARPGVKKVMIIVTDGESHDFYNLDKVIKECEEDDIERF
GIAVLGDYNRNNRSIKEVKKFIEEIQSISSDPVGDHFFNVSDEFALLNIVDALGSRIFAL
EATSGNYTSSFEMEMSQAGFSAHTSKEGVMLGAVGAYEWNGTVVMHTNQGTVVPLNADFQ
DPLDERKEGLAGYVGYAVQSASTPNGELYITGAPRYNHTGRVIVYKLDGEIITVTQVLKG
EQIGSYFGSVLQTVDVDQDSYTDILLVGAPMFMGPEREEQGQVYVYKLNEKGLFEHQTTL
KPDNQTCCTSAHSNGCTIVNISGPCGARFGTAIAEVSDLDLDGNRDVAIGAPLENDHKGA
VYVYHGAKKTIKEKYVQRIPGPGDGVKTKFFGQSIHGVMDLNGDGIIDITIGGLGGASLF
WSKDVAELYANMTFDPNKINLQQPSEDCVLGERATVCVKTRVCFSYSVKSEKDHTNLGTA
IKYNLTLDSLRAKSRAAFVNPDEKSERKVQVTANIIDALCLEHSFAMKANLDFRDPIMIS
LEFGLAEDTGPVLDGDLPTSLNKTIPLVDCGSDDKCIADLSLKAVPSIQSLVIKANKEKF
HVLITIRNSQDNAYNTKVMLSFTENINYVKVKANDKVCSLNNTKVECAVGYPFLKSNVEE
VFEILFEVNPAHVWKEIQINVTATSDSEELKTTLHDNSVRISIPVKYEAGLRFTADRHMK
EDHIIVKEGEQYPSIFNHTSVIGEEVKIIYTVKKDVNMETPPLKLRVMYPYLSPRENILL
YLTHVTSSQDVRCHTRDLINPLKINNNNTHTINPKKETLSVFLVGCKDHPCKSFVCSIPH
VNNSQVNVTFRVWKPTFIKAEFSSLHMIVNATLENLNTDLFVLSATNYARDVKIQVSKEA
LGGIPLWIIIVSILIGLLILALVIFALWKAGFFKRKSIEDMENEDMKN
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgctccggcaaatgcaatatttgaaattagcgacagcactcgtgttgctatcgtgtgtg
tcgtcatttaacgtggatgacaagaatggggagactttcaatggtccgctggaggacatg
tttggatactcagtccagcagtttgagaacagtgaggggaagtgggtgctgattggttct
cccctggccggccagccagccaaacggactggagatgtctacaaatgccgtgtgggtcaa
ggaccaaaccctagatgtatcaaactggaactgcctgaaaacacaacaattcctaattta
cacgaagtcaaggaaaacatgaccatgggaacgacgttggttaccaaccctcaaggaggc
tttctggcctgtggtccacagtacggctacatgtgtggtcagcagacatacatctctggg
gtctgtaccaacgtcagctcaaccttccaggtgctcaactccatcgccccggctgtgcaa
gagtgtgccaaagagcttgacattgtcatggttcttgacggctccaacagtatctggccc
tggaccagcatcattgatttcctggtcaagtttctgaagaatatcgaaattggagctaaa
ctgtcccaggtgggcattgtgtcgtatggagaggaagtcactcacaatgtcaacctcagc
cagtttgataccactcaatccctcctagccaaagtggcgaaacttccccagcaaacaggt
ttcaagactatgaccgccctgggaattgacactgcaaggaaagaggccttcactgtggag
cgaggggcgcggccgggggtcaagaaggtcatgataattgtgacggacggagagtcacat
gacttttataacctcgacaaggtcatcaaagaatgtgaggaggacgatatcgagaggttc
ggtatcgctgtgcttggtgattacaacaggaacaacagaagcatcaaggaggtgaagaaa
ttcattgaggagatccagtcgatctccagcgatcctgtgggagatcacttcttcaacgtg
tcggatgagtttgccttgctgaacatcgtagacgccctgggcagcaggatctttgccttg
gaggcaacgtcaggtaactacacctcgtcttttgagatggagatgtcccaggctggattt
agtgcccacacctccaaagagggtgtgatgctgggtgctgtgggggcgtatgagtggaac
gggacagtagtgatgcataccaaccagggtaccgtggttcctctaaacgcagacttccaa
gaccccctggatgaaaggaaggagggcctggcagggtacgtgggttatgccgtacagtca
gcatcaacgcctaatggtgaattatacatcacaggagcaccgcggtacaaccacacaggc
agagtcatcgtctacaaactggatggggaaatcatcacagtcacacaagtactgaaagga
gagcagattggatcctactttggcagcgtgctccagacggtggatgttgaccaggactcc
tacacagacatcctgctggtgggagctcctatgttcatgggcccagagagggaggaacag
ggacaggtgtacgtctacaaactcaatgagaagggcctatttgagcaccagactacgctg
aagccagacaaccagacgtgttgtacctcggcccactccaacggttgcaccatcgtcaac
atcagcggcccgtgtggcgcccgcttcggcaccgccatcgcagaggtcagtgacctagac
ctggacgggaaccgggacgtggccatcggggcgccactggagaacgaccacaaaggggca
gtctacgtctaccatggagccaagaagaccatcaaggaaaaatatgtgcagcgtatccca
ggccctggagacggggtgaagactaagttctttggccagtcgatccacggagtcatggat
ctgaacggagacggaattatagacattaccatcggagggctgggaggggcttctctgttc
tggtccaaggatgttgctgagctttatgccaacatgacctttgacccaaacaagatcaac
ctacagcagccctctgaagactgtgtgctgggtgagagagccaccgtgtgtgtgaagacc
agggtctgctttagttacagtgtcaagtctgagaaggaccacactaacttgggcacagcc
attaagtacaacctgactctggactctctgagggcaaagtcgagggcagcgtttgtcaac
cctgacgagaagagtgagaggaaggtccaggtcaccgccaacatcatagatgctctgtgt
ctggaacattcctttgccatgaaggctaatctggacttcagagaccccatcatgatctcc
ctcgagtttggtctggctgaggacacaggccccgtcctggatggagacttaccaacgtca
cttaacaaaacgattcctttggtggactgtgggagcgatgacaagtgcatagctgaccta
tccctgaaggctgtgccaagtatacaaagtcttgtgatcaaagccaacaaggaaaagttc
catgtgctcattaccattagaaacagtcaagacaatgcctacaataccaaagtcatgctc
agctttactgaaaacataaactacgtcaaagtcaaggccaatgacaaagtctgcagtctg
aataataccaaagttgagtgtgctgtgggatatccattcctcaaaagtaatgtagaggag
gtgtttgagatcctgtttgaagtcaaccctgcacacgtctggaaagagattcagatcaac
gtaactgcaaccagtgacagtgaggaattgaagaccaccctccatgacaactctgtgaga
atctccatccctgtgaagtacgaggctggactcagattcactgctgacaggcatatgaag
gaggaccacatcatagtgaaagagggagagcagtaccccagcatcttcaaccacaccagt
gtgataggagaagaggtcaagatcatctatacggttaaaaaggatgtgaatatggagact
cctcctctaaagctgagggtgatgtacccatacctatcacctagagagaacatcctgcta
tacctgacacatgtcacctcctcacaggatgtgagatgtcacaccagggacctgattaac
cctttaaagatcaacaacaacaacacgcacaccatcaatcctaaaaaagagaccctcagt
gtcttcctggtgggctgtaaggaccacccgtgtaagtcatttgtctgctccatccctcac
gtcaacaacagccaggtcaatgttaccttcagggtgtggaagcccacctttatcaaagca
gagttctccagccttcacatgattgttaatgccactctggagaacctgaacactgatctc
ttcgtgttgagtgccaccaattacgccagagatgtgaagatccaggtctctaaagaggct
ttgggaggtataccactgtggatcattatagtcagtatcctcataggactgctgattctg
gcactggtcatcttcgctctatggaaggctggatttttcaagagaaaatccatagaggac
atggagaacgaggacatgaagaattaa
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