Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422754
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Entry
139422754 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DHX29
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ocla03012
]
139422754
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139422754
Translation factors [BR:
ocla03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139422754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_DHX29
DEAD
Helicase_C
OB_NTP_bind
HA2_C
DSRM_DHX29
AAA_22
nSTAND3
HA2_N
AAA_19
AAA_16
NPHP3_N
nSTAND1
ATPase
Motif
Other DBs
NCBI-GeneID:
139422754
NCBI-ProteinID:
XP_071030178
LinkDB
All DBs
Position
12:complement(15193583..15215906)
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AA seq
1382 aa
AA seq
DB search
MGGKKKKSATVPTVQPAAAGNNVPAAGNGVADPATTGKKQKPTPAKAAVKDIKPKGPKTY
SLTNTAQVDTGGVTDKSILKVVIQTDLEKKIIKLINDFRQENGDKGPISGRLTNKKLLDL
YLALQKFKFKTEHIEEAMKSSVLYGGDLHSALDWLCLNLKDEELPAGFSQRMQEENHETK
PKFQPAPQAPEPESPKEPKKEPAKVPVKDEGASVKEWILRYAEQSSEESSEEEEEQSGKK
TRNPELDEKFDPNDRYLVLTAQLYDAKEMAATAKGKKDKGGQRTAQDRIRVIQQEMKPLE
SHPMFNTVIKVVDTPKIEEKKPPAPTEGKEELAFGLFEQAEKETPPPAEKTAKNNEPKDI
RNFDYTARSWTGKSPKQFLIDWVRKNLPKSPAPSFQKVAAGRYWKCRVRVQRLDDVLEVC
PNILTEDGMQAQHLGATLAIYNLCKGQSVHMLIPPTYREVWLEWRDSEQAEEEELRTAIN
KPRDQFITRLLTRLKQQQPQKKCPSPQPGLQGAGDELEDDWESLANLEEEEDPGKTITPK
ERGGGVAEVAARALLLKLRGSALSRRLQTDREQLPVFQHRVRVMEALRRNRVVVVAGETG
SGKSTQIPQFILEELLTGGAAAQPCNIVVTQPRRISAMSLASRVSQELGCDDGPGSKSSL
CGYQIRMENKSSDSTRLLYCTTGVLLRKLQQDHMLSSLTHIIVDEVHERSVQSDFLLTIL
KDVVQKRSNLHLVMMSATVDCDKFAAYFNRCPIVNIPGRTFPVEVFHLEDIVEETGYVLE
KDSEYSQKILEEEEEVNINFTQKGGKSMQHQEFIVKDSGSGWDLGPDLDHFSSRTRHALQ
YMNPNKINMELVLDLLDYLDKSPQFAVVDGAVLVFLPGLAHIQQLYDLLSTDKRFRGKDR
YKLVALHSTLSSKDQAAAFTVPPTGVRKIVLSTNIAETGVTIPDVVFVIDTGKTKENKYH
ESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRLYPKFRFQAFMDYSIPEILRVPLEE
LCLHIMKCEYGSPEEFLCRALDAPQPQSVSNAVCLLRRIGACIPEGHALTPLGHHLATLP
VNVKIGKMLIFGAILGCLDPIATIAAAISEKSPFATPMNQKDQANLAKAALAVANSDHLT
IYNAYLGWKNIRSEGYRAEMAYCRKHFLNRTALITIEDIKQELMRMMDQAGFSGSSRSGR
GPPSRDRSDPRGPQAPLTPLGKPQICVLNAVLTAGLYDSVGRILYTPSVDVLDRVACSVE
TAQGKAQVHPSSVNRCLQTRGWLLFQEKVKYSKIYLRDTTLISPFPMLLFGGDIDVQHRE
RLISLDGWIHFQAPVRIGVIFKHLRKLIDSLLEKKLENPRMNLEDEKTIQLIIELIKMEN
VF
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaaagaagaagaaatcagccactgtccctacagtccaaccggcagcagcaggc
aacaatgttcctgctgctggaaacggcgtggctgaccctgctactactgggaaaaagcag
aagccaactcctgctaaagctgctgtgaaagatatcaagccaaaaggtccaaagacctac
agcctcacaaacacagcacaagtggacacaggaggagtcactgacaagtctatactcaaa
gttgtcattcaaacagacttggagaagaagatcatcaaactgatcaatgatttcaggcaa
gagaatggagacaaaggaccgatatcaggaagactcaccaacaagaaactgctggatctc
tacttagctctgcagaagttcaagtttaagacggagcacattgaggaagccatgaaaagc
agtgtgttgtatggaggagacctgcactctgccctcgactggctttgcctgaacctgaaa
gatgaggagctgccagcaggtttcagtcagaggatgcaggaagagaaccatgagaccaag
ccaaagttccagcctgcaccccaagcacccgaacctgagtctcccaaagagccgaagaaa
gagcctgcaaaggtgcctgtgaaggatgagggagccagtgtgaaggagtggatccttaga
tacgcagagcagtccagtgaggagagcagcgaagaagaggaggagcagagtgggaagaag
acacggaacccagaactggatgagaagtttgatccgaacgacaggtacctggtgctcact
gcacagctgtacgatgccaaggagatggctgctacagccaagggcaagaaggacaaagga
ggacagaggactgcacaggacagaatcagagtcatacagcaagagatgaagccactagaa
tcccatcctatgttcaacacagtgataaaagttgtagacacgcccaaaatcgaggagaag
aaaccacctgctccaactgagggcaaggaagaactggcattcggcctgtttgaacaagct
gaaaaggaaacgccccctcccgcagagaaaacagcgaaaaataatgagcctaaagacatc
cgtaactttgactacacggctcgcagctggaccggcaagtcccccaaacagttcctgatt
gactgggtcaggaagaacctccctaagagccctgctccctccttccagaaggttgctgct
gggagatactggaagtgcagggttcgtgttcagagactggatgatgttttggaggtttgt
cccaatattctcactgaggacggcatgcaggctcagcacctgggtgcaacactggccatc
tacaacctatgtaaaggacagtcagtccatatgttgatccctcccacgtaccgtgaggtg
tggctggagtggcgggacagcgagcaggcagaggaggaggagctccgcacagccatcaac
aaaccccgagaccagttcatcacccgactgctgacccggctgaagcagcagcaaccccag
aagaagtgtccttctccccagccagggctgcagggagctggggacgagctcgaggatgac
tgggagagcctggccaacctggaggaagaggaggacccagggaaaaccattaccccgaag
gagagaggtggtggggttgcagaggtggcggctcgggcccttcttctgaagctccgtggc
tcggccctgtccaggcggttacagacggacagagagcagctcccggtgttccagcaccgc
gtgcgggttatggaggctctgcgacgcaaccgtgtggtggtggtagcgggggagacgggc
agcgggaagagtacccagatcccccagtttatcctagaggagcttctgactgggggagct
gctgcacagccctgtaacatagtggtcacccagccacgcaggatctctgccatgagtctg
gccagcagggtgtctcaggagctgggctgtgacgacgggcctggatccaagtcgtcgctg
tgcgggtaccagatccggatggagaacaagtcttcggactcgacccgtcttctgtactgc
accaccggggttctcctcaggaagctgcagcaggaccacatgctcagctctctgacccac
atcatagtggacgaggtccatgaacgcagcgtccagtctgatttcctgctgaccatcctg
aaggacgtggtccagaaacggtccaacctgcacctggtcatgatgagcgccacggtcgac
tgtgataagttcgctgcctacttcaaccgctgtcctatagtcaacatccctggcagaacc
ttccctgtcgaggtgttccatctggaggacatagtggaggagacaggctatgttctggag
aaggactctgaatacagccagaagatcctggaggaggaggaggaggtcaacatcaacttc
acgcagaaaggagggaagagcatgcagcaccaggagtttatagtgaaagactcaggctct
ggctgggacctgggtcctgacctggaccacttcagcagccggacccgccacgccctgcag
tacatgaaccccaacaaaatcaacatggaactggtcctggacttgctcgactacctggat
aagtctcctcagtttgcagtggtggatggagctgttctggtgttcctcccaggtctggcc
cacatccaacagctttatgacctgctctccacagacaagaggttccgtggcaaagacagg
tacaaactggtagccctgcactccacactgtcatctaaggaccaggctgctgcatttaca
gtgccccctactggagttagaaagattgtgctgtccacaaacatagcagaaactggagta
acaatacctgatgttgtgttcgttattgataccggaaagaccaaagaaaacaagtaccat
gagagtagccagatgagttccctggtggagacgtttgtcagcaaggccagcgccctccag
aggcaaggcagggcaggacgcgtgcgggacggcttctgcttccgcctgtaccccaaattc
aggtttcaggctttcatggattactccataccagagatactgagggttccactggaggag
ctgtgtcttcatatcatgaaatgtgagtatggctctccagaggagttcctgtgtcgagcc
ctagacgcgccccagccccagtctgtgagtaacgctgtgtgcctgctccggaggatcgga
gcgtgtataccggagggccacgccctcaccccgctgggtcaccatctcgccaccttgcct
gtcaacgtcaagatcggcaagatgctcatctttggtgccatcttgggctgcctggacccc
attgcgactatagcagcagcgatctctgagaagtctccctttgccacacccatgaaccag
aaggatcaggctaacctggctaaagctgccctggctgtagccaactcagatcacctgact
atctacaatgcttacctggggtggaagaacatacgcagtgagggatatcgagccgaaatg
gcctactgcaggaaacacttcctgaaccgtaccgccctcatcaccatagaggatatcaaa
caggagctgatgcgtatgatggaccaggctggattctctggttcctccaggtccggtcga
ggaccaccttcccgggatcggtctgaccccaggggtccccaggctcccctcacccccctt
gggaagcctcagatctgtgtcctgaacgcggtgctgacggcaggactgtatgacagcgtg
gggcggatcctctacactccctctgtggacgtcctggaccgggtggcgtgctctgtggag
actgcccaggggaaggcccaagtccacccctcctctgtcaaccgctgcctgcagacacgc
ggctggctgctcttccaggagaaggtaaaatactctaagatctacctgcgggacacgacg
ctgatctctcccttccccatgctactgtttggaggggacatcgacgtacaacaccgggag
agactcatctctctggatggatggatacacttccaggccccagtgaggataggagtgatc
tttaaacatctgaggaagctcatagactcactactggagaaaaagctggagaacccaagg
atgaatctagaagatgagaagaccatccagttgataatagaactgatcaagatggagaat
gtcttctga
DBGET
integrated database retrieval system
