KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422755
Entry
139422755         CDS       T10872                                 
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018  RNA degradation
Brite
Enzymes [BR:ocla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     139422755
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     139422755
Spliceosome [BR:ocla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    139422755
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    139422755
Ribosome biogenesis [BR:ocla03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    139422755
Transfer RNA biogenesis [BR:ocla03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    139422755
SSDB
Other DBs
NCBI-GeneID: 139422755
NCBI-ProteinID: XP_071030179
LinkDB
Position
12:15215916..15269366
AA seq 1036 aa
MADAFGDDLFSVFDEEQTSSTKKKPPIPEKGKATSNNDKGGTNEPPAAKTKREADNDGTD
EVVFGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDTKGRKG
GTRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNN
AVDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMG
KLEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNED
VDFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQVT
ALLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADG
ITKIKRDIVFAASLYL
NT seq 3111 nt   +upstreamnt  +downstreamnt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaaccaccaatacctgaaaaggggaaagcaaccagtaataatgataaaggc
ggaacgaacgagccccctgctgccaagaccaagagggaagcagacaacgacgggacagat
gaggtggtgttcgggaaaaaggccaagctggagactgtctctacagaggagatcaatctt
gcagactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagca
gccaaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagac
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagccctgagagggaagcagagggtcatcttcaccagccccatcaag
gccctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatg
accggtgacgtcaccatcaaccccactgcctcctgccttgtcatgaccactgagattctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgcagagcgtggtgtggtctgggaggagaccatcatcctg
cttcctgacaatgtccactatgtcttcctgtccgccactatccccaacgccaagcagttt
gctgagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcgg
cccacccccctgcagcactacatcttcccagcaggtggtgacggacttcaccttgtggtg
gatgagaatggagagttcagagaggacaacttcaacacggccatgcaggtgctgagagac
acaggggactctgggggcagcagcggaggtggcaagtgggacaccaagggacgcaaagga
ggaacacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttc
cagccggttatcatcttcagcttcagtaagaaggagtgcgaggcctacgccctgcaggtg
tccaagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaac
gctgtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgtcctacca
ctactgaagagaggtatagggattcaccatgggggactgctccccattctgaaggaaacc
attgagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgcc
atgggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgatggatcacgtctggcgagtacatccagatgtctggccgagctggcagg
agagggatggacgagagaggtattgtcatcttcatggttgatgagaagatgagccctgca
gtggggaaacagctgctcaagggctcagctgaccctctcaacagtgccttccacctcacc
tacaacatggttctcaacctgctgcgggtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggcgtcgtagagaagatgggg
aagctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttac
tataagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaa
cccaagtactgccttcctttcctccagcctggtagattggtcaaggtcaaaaacgaagat
gttgactttggatggggcgtagtcgttaatttctcaaagaagtcaaacgtcaaggccagt
acaggtgatgcagaccctctttacgtggtggaggtgctggtccactgtagtcaggagagt
gtgaagaatgcagctacagaggctgctaaacctgctgccactggggagaagggtgaaatg
caggtggttcctgtgatgctccgcctcttgacctctatcagttcagtccgtctctacatc
cccaaagacctccggccttatgacaacagacagagcatgctgaaatccatacaggaggtg
cagaagcgcttcccagacggagttcccctgctggaccccattgatgacatgggcatcaag
gacccaggcctgaagaagatcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggctgtctactccctctgcgagaagaaagcc
ctgattgcaggggacattaaaggggccaagcgggagctgaaaaaggctaggaccgtcctg
cagatggacgagctgaagtgcaggaagcgtgtcctgagacgtctggggttcgctacttcc
tctgatgtcatcgagatgaagggcagagtggcctgtgagatcagcagtgctgatgagctg
ctgctgactgagatggtgttcaacggtctgttcaacgatctgactgcagaacaggttact
gctctgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgctaaggtgtct
gcagaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcacctg
atggatgtggtctacacctgggctaacggctccaccttcgctcagatctgcaagatgacc
gacgtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcag
atgtgtcaggcagccaaggccatcggcaacaccgagctggagaacaagtttgcagatggt
atcacaaaaatcaagagggatattgtgtttgctgctagtctatatctgtaa

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