Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422951
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Entry
139422951 CDS
T10872
Name
(RefSeq) RNA-binding protein Musashi homolog 2 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139422951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139422951
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139422951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
CSD
Motif
Other DBs
NCBI-GeneID:
139422951
NCBI-ProteinID:
XP_071030553
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All DBs
Position
12:26307400..26658770
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AA seq
425 aa
AA seq
DB search
MEGDGSQVTSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
SRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFITFEGEDVVEKVCEIHFHEINNKMV
ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSEYGPTLLQHSPARYSVPHGYPN
IVATYGRGYTGFTPSYSYQFPGFPATAYGPVAAAAVAAARGSGRGARGQGMAYPQNTGPG
FHDYGFYSAPSDQRGAPCSFADYGSLGPQAAQMLHSEHATSACNSPLQHLHSPDQFKSPG
GNPARPGGFPGANSPGPVADLYGPGGQDSNVANYISAASPQAGSGFGHSIAQSLSGGPGK
TDRTF
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagacgggagtcaagttacatctggaagcccaaatgattcacaacatgacccg
ggtaaaatgtttattggtggcctcagctggcaaacctcaccagacagccttagagactat
tttagcaaattcggagaaataagagaatgtatggtgatgagagaccccacaacaaaacgt
tccagaggatttggattcgttacgtttgcagatgctgccagtgtagataaagtcttagct
caaccacaccacgaattagactcaaagacgattgatcctaaggttgccttcccccgacgc
gctcaacccaagatggtcacaagaacaaagaaaatatttgtgggcggattgtcagccaac
acagtggtggaagatgtgaagcagtattttgaacagtttgggaaggtagaagacgccatg
ctaatgtttgataaaactactaacagacatagaggatttggcttcataactttcgagggc
gaagacgtcgtagagaaagtctgtgaaattcattttcatgaaatcaataataaaatggta
gaatgtaagaaggcccagcccaaggaggtgatgttcccaccaggcacgcgagggagggcc
aggggcctgccctacaccatggacgccttcatgctggggatgggcatgctgagtgagtat
ggaccaacactactccagcacagtccagcacgttactcagtcccacacggttacccgaac
attgtggcaacatacggtcgtggttacactggattcacccccagttacagctatcagttc
cctggtttcccggcgacggcgtacggaccggtggcggcagcggcggtggcagcagcgcgt
ggctcaggtaggggggcccgaggacaaggcatggcgtacccgcagaacacagggccaggc
tttcacgattacgggttttactctgcgcccagtgaccagaggggggcgccctgctccttt
gcggactatggctccctggggccccaggcggctcagatgctgcacagtgagcatgccacc
tccgcctgcaactcccccctccagcacctgcacagcccggatcagtttaagagcccaggg
ggaaacccagctcgtcctggaggcttcccaggtgccaacagcccagggcctgtagccgac
ctgtacggccctggaggccaggactccaatgtggctaactacatcagtgctgctagcccc
caggctggctccggcttcggccacagtatcgcacagagtctatctggtggtccagggaag
acagaccgaaccttctaa
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