Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422954
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Entry
139422954 CDS
T10872
Name
(RefSeq) ectodysplasin-A-like
KO
K05480
ectodysplasin-A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139422954
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ocla04052
]
139422954
Cytokines and neuropeptides [BR:
ocla04052
]
Cytokines
Tumor necrosis fators
139422954
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
TNF
Motif
Other DBs
NCBI-GeneID:
139422954
NCBI-ProteinID:
XP_071030569
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All DBs
Position
12:complement(27081967..27149961)
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AA seq
365 aa
AA seq
DB search
MAPKSLSEKLANLEDSDLKESTCICRKQCKNCKIFLGFFVLSLSLHLVTLFCYLDLRSEV
KREILQKNREETLSPAATDMNDRYSPVFQLLDISYPADLQNRLPLGNSDESSHLKEDRDN
AVHRTKRSQQNKRLDSESHGNKRKERKKGKKGPPGAPGPLGPPGPQGPPGIPGIPGIPGN
NAMGPSGPPGPPGPAGPPGPQGPPGLQGPSGGRVRDSQLAVVHLQGQETTIQVKEDLSEG
VLRNWKMISMHHKVFKMHSRSGELEVLVDGTYFIYSQVEVYYLNFTDIASYEVMVDKTPF
LRCTRSIETGQRKFNTCYTAGVCLLRARQKISIKMVYEDTSISMTNHTTFLGSIRLGDAP
PASHS
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaaatcgctgtctgaaaagttagcaaatttagaggacagtgacttaaaagag
tctacctgcatttgcaggaaacagtgtaagaactgtaaaatctttctgggattcttcgtc
ttatccctttcattgcatctagttacgcttttctgttatttggacctgagatccgaagtg
aaacgcgagattctccagaagaacagagaggagacactgtcaccggccgcaactgatatg
aatgaccgatattctccagtattccagctgttggatatcagctacccagctgatctacag
aataggttgcctctggggaacagtgacgaaagctctcacctcaaagaagacagagacaat
gctgtccatcgcaccaaaaggagccagcagaataaacgacttgattcagaatcacatgga
aacaaacgaaaagaaaggaaaaaaggtaagaagggccctccgggtgcacctggcccccta
ggccctccagggccacaggggccacctggtattcctggcattccaggcatccctgggaac
aacgccatgggcccctcaggaccacccggacctccaggccctgctggacccccagggcca
cagggaccccctggtcttcaaggaccctcagggggcagagtcagagatagccagctggct
gtggtacatctccaaggccaggaaacaacaatacaggtcaaggaagatctttcagaaggc
gtactgagaaactggaaaatgatatccatgcatcacaaggtgttcaagatgcactcgaga
tctggggagctggaggtgttggtagatggcacctacttcatctatagtcaggtagaagtt
tactacctcaacttcactgacattgctagctatgaggtgatggtggacaagacgccgttc
ctgcgctgtacgcggagcattgagacgggacagcgcaagttcaacacctgctacacggct
ggggtgtgtctgttgcgtgcccggcagaagatctccatcaagatggtgtacgaggacacc
tccatcagcatgaccaaccacaccaccttcttggggagcatccgcctcggggatgccccc
ccggccagccactcctga
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