Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139422981
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Entry
139422981 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
139422981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139422981
03036 Chromosome and associated proteins [BR:
ocla03036
]
139422981
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
139422981
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
139422981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADD_ATRX
C5HCH
Vps8_C_schizo
PHD
Motif
Other DBs
NCBI-GeneID:
139422981
NCBI-ProteinID:
XP_071030621
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All DBs
Position
12:28663413..28674403
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AA seq
1000 aa
AA seq
DB search
MSSEMLSVPPGTSKLDVLVTKLHEFLAHAPEDDEDRLVTESPDGMTNKDCVEPHSTDRTP
LEPQQTSTDTLKQSGCGSRRKPSVVIKHSGLDESGASNESDDDDDGLIINSNGYPDVTRL
PKGTVLVRPEPVENVRDDFRGPEFRCGKSGSLKRAFSRRRGGGEHLEIVSCTACGQQVNH
FQRDSFYQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFC
KKCILRNLGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGHLWPDHRKRGRG
EGKSGHYDSHPRHSQNIPVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNT
TFVKFIQGGMQQKQTTELKLQYLKTFQSVLKGLKKSQTALEEALLEEFREMGLPNGGENP
TFDDTDVPQQEQEGCVEIDISDKNGLHYLKKIAAEHLEENDSDSNGFMDDGRPSSSIEMK
GVLGTEIIPRRGRGRPRKNSKPGEDACNVTKQLVVQVSPAPVEQEPLSGPQELEVEVELE
AEEEEEERKEKVEEREVDCESIELVTEGEYESAEGSESLELEEEPDNRRSPRVKTTPLRR
PGEGKTQPTPSGADSESDSDPDTSPNAEVPQGADEGGLGRGTDDSDSDEVPAVLQRAAMT
RSSDEAESDDGDHRSVTKKCLFGLKKNTPLSPERVVRKRKVPDRSSDSDSSSDDPDLQKE
IKTMTRPRGRPRKVKREDEPTPSKDSPQHRPRGRPRKVKKEDESTSSKEGNTQAAKPQST
PQSEHRMKQTPSSSSQEEGDLDSESSDVSGDQKIKPITEEVALLGAAAFHQSSGDEEQPQ
SGPSWAAEDDDDPENRIAKKMLLAQIKANYSSGEDFSSNVESSHDDESDREEKEQEDGKD
ESSDENGETSNLTSXESSKTRHRHRLLRHKLSVDNGNPSDQKTADENGIEQKVRKSRRTN
GEKLDSQSSDDDSQSQQEESGMSEELSQSENEGNEQMLKR
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagagatgctcagcgttcctcctggcacgagcaagctcgatgtgttggtgacc
aaactgcatgaattcctggctcatgctccagaggatgatgaggacagactggtgacagaa
agtcctgatggtatgacaaacaaggactgtgtggagccacactcaacagaccgaacccct
cttgagcctcaacagacctcaaccgacaccttgaagcagtctggatgtggttccaggaga
aaaccttcagttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagt
gatgatgatgatgacggcttgatcatcaattcaaacggttatcctgatgtaacaagatta
ccgaaaggcactgtactggtgaggcctgagccagtggaaaatgtcagagatgacttcaga
ggtcccgaattccgttgtggaaaatctggcagtctgaagagagctttttctaggagacgt
ggaggtggtgaacacttggagatcgttagctgtacagcctgtggccagcaagttaaccac
ttccagagggactccttctatcagcatccagtactcaaagtacttatttgcaagtcttgt
ttcaagtattactcaagtgatgatatcagcaaggattgtgatggcatggatgaacagtgc
agatggtgtgcagaggggggaaacctgatctgctgcgacttttgccccaatgccttctgt
aagaaatgcattttgcggaacctggggcgaaaagagttgtctggcatcctggatgaggag
agtaagtggtactgctacgtatgtagcccagagcctcttctggacctggttgtcgcttgt
gacaacgtccttgacaacttggggcatttgtggccagaccaccgcaagaggggcaggggc
gagggaaaatctggacattatgactcccatccaaggcattctcaaaacattcctgtgggt
cattggaaccatagtggcatggatggtcacgttgtgttcaactacaacacccttcaaatt
ccagaggagatggccaaaaaggctaaaaacctggtggactctacaaacactgtaaacaca
acttttgtgaagttcattcaaggtggcatgcagcagaaacagacaactgagttaaagcta
caatacttgaagactttccagtcagtactgaagggtctgaagaagtctcagacggctctg
gaggaagcccttttggaggagttcagagagatgggtttgccaaatggtggcgaaaacccc
acgtttgatgatactgatgtacctcaacaagaacaagagggttgtgtggaaattgacatt
tctgataagaatggccttcattacttaaagaaaattgcagctgaacatttggaagagaat
gattcagactcaaatggctttatggatgatggaaggccttcgtcctcaattgaaatgaaa
ggtgtccttggcacagagataattcccagacgaggtagaggcaggccgcggaaaaactcc
aagcctggagaagatgcttgcaacgtgacaaaacaactggtggtgcaagtttcacctgcc
cctgttgaacaagagccactctctggcccccaagagttggaggtggaagtggagttggag
gcagaggaggaagaggaagagagaaaagaaaaagtggaggaacgggaggtagactgtgaa
tctattgaacttgtaacagagggggagtatgaatctgccgagggaagcgaatctctggaa
ctggaagaggaaccagataatagacgctcacctcgggtaaagaccacacccttgcgcagg
ccaggtgagggcaagacccagccgaccccctcgggtgcagacagtgagagtgactcggac
cctgacaccagccccaatgctgaagtgcctcaaggagctgacgagggagggcttgggaga
ggaactgatgactctgactccgatgaggtcccagctgtcctccagcgggccgccatgacg
cgtagttcagacgaagccgagagtgacgatggagaccatcggagtgtgaccaagaaatgc
ctcttcggcctgaagaagaacacgcccctctctccagaaagagttgtccggaaacgcaag
gtgccagaccgctcctctgactctgattcctccagtgacgatccggacctgcagaaggag
atcaagaccatgaccaggcccagggggaggcctcggaaggttaagagagaggatgaacct
actcccagcaaggatagtcctcaacataggcccaggggcagacctcggaaggtcaagaaa
gaggatgaatctacatccagcaaggagggtaatacccaggcagccaagcctcaaagcaca
cctcaatccgagcatagaatgaagcagacgccatcctcttccagtcaagaagagggggac
ctggactctgagtctagcgatgtcagtggtgaccagaagatcaagcctatcactgaggag
gtggccttactgggggcagcagctttccaccagtcgtccggcgatgaagagcagccccag
tctgggccttcttgggcagcagaagatgatgacgatccagaaaatagaatcgctaagaaa
atgctcttggcccaaatcaaagccaactactcatcgggggaggatttctcttcaaacgtg
gagtcatcacatgatgatgagtctgacagggaagaaaaggagcaagaagatgggaaagat
gaaagctcagatgagaatggggagacctccaatttgacctctnntgagtccagtaaaaca
cgtcacagacatcgtctgctacgccacaagctcagcgttgacaatggaaatccaagtgat
cagaaaaccgctgatgaaaatgggattgagcagaaagtcaggaagtctagaagaaccaac
ggtgagaaattggatagccagagtagtgatgatgatagccaatcacagcaggaagagtct
ggtatgagtgaagagctgagccaatcggagaacgagggcaatgaacagatgctcaaaaga
taa
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