Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423065
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Entry
139423065 CDS
T10872
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139423065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139423065
03036 Chromosome and associated proteins [BR:
ocla03036
]
139423065
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139423065
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139423065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
139423065
NCBI-ProteinID:
XP_071030784
LinkDB
All DBs
Position
12:complement(31665048..31689743)
Genome browser
AA seq
1828 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTANTGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGTAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGTATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALNLGTGTNPSNFGFGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KTLGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLWRVGYYTIPAMDELAKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSTAVLELLSRMSEVDSDMAD
ITQDAPGESMLEEVGESGMGEDKGSRLGTVTPTEHNPVSASSQIASSMGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVAP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSVAGDKEQDQGDAGAGGFGF
LPKHAKSKLLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQ
PQSGVAALHEYVEWITDLNQEAGAGDGVLAHWALVWTLCEALWGRLGTTEPEPGTSGYLQ
QLERRRSFSAWLSHSATQRIEQEVGLSHGGGHVEAIFSYLTGHRISDACRLAQKSGDHRL
SLLLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVC
SELDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSVPLDM
EEEESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTH
LSPARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESA
QKERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCI
INDNHEYLLEFLEGLAVPERCAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERL
HTEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHI
GRLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggtgcgacgacaggtggcttcggggcctca
gcatttggggcgaccaacaacactggaggactctttggtgcgacgcagaataaaccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcacg
gccagcggcacgtccactagcctgttcggcagcaccaacacgggcggcggtggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcacggccaacaccggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcttccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtacgagaacaagtcactg
gaggagctgaggttggaggactaccaggcaggaaggaaggggcccactaaccccatggct
gcaccaacggggggtctctttgggactgcggccgcagccacccccagtacgggggctgca
gggctgtttggctcctcggccaccaacacaggcttctccttcggccaggccaaaactaac
ttcggcaccagtactggtgggtttggtacagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcgtcccaggcaggggggttgtttgga
aacacagctcagaccacaccagccacaggctttgggacaggcaccggtctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcctcgtcgtttggcacaggcaccggcctctttggt
aacaaatccgccctcaacctcggaacaggcaccaacccatctaactttggttttggaccc
actgctgctggcggaagcctctttgggaacaagacggcagcaggaggactggggaccgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aagacactgggttccactctgggaacaataggagcgttcggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgttgcactgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaaaaagaaggaggagcgt
ctaaagcccaccaatccggcagcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgatgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcatctccaccggagtaccccctcaacgga
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggccgag
gatgacctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagag
ctcaatgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggagaggactccatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacaccctgcaggtatcgttctgtggcgtgtgggctactataccatccctgccatggat
gagctggccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgtgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggttatcgtctaccccgacgacaagaacaag
cctgctgagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcct
aatgataagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgtctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttctctaagtatggcctgcaggactct
gatgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccacggctgtgctggagctgctgagccgcatgtctgaggttgacagtgacatggccgac
attacccaggatgccccaggggagagcatgttggaggaggttggggagagcggcatgggg
gaggataagggcagtcggctgggtactgtgacccccacagaacacaaccctgtctctgca
tccagtcagattgcctcctcgatgggaatcaaccctcacactctccagatcatgaaggca
tctctgtttgctgaggatgatgatggtgacatgttccttgagcagggagggatgaagagc
tctctagacagggcctcccctcgcatcctcctgcctggcactcagggcaggccctccatc
ggtggtctcttgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggagggggccttcccgggaggctgtccatgtctcggccttccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctctttcctgctgccggcccca
gcggcagaggccactgtacggacggtgggggctcgacgcctggggggccctgtggcccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtcgttccgggttggctggggtccaggctggactctggtccactgtggagaccggctg
agtgtggctggggacaaggagcaggaccagggagacgcaggagctggaggttttggattt
ttgcctaaacatgccaagagcaaactactctcagacagtccgttcaaggtggtgatcgag
caggtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggccc
ctggagattggcctgaagcacagcaccatcagtacagagggtgcctgccccttcatccag
ccccagagtggggtggccgccttgcacgagtacgtggagtggatcactgacctcaaccag
gaggctggtgccggagacggggtcttggctcactgggctctggtgtggactctgtgtgag
gccctgtggggtcggctgggtacgacagagccagagcctggtaccagcggctacctgcag
cagctggagaggaggaggagcttctcagcctggctgtcccacagcgccacccagaggatc
gagcaggaggtgggcctgagccatgggggaggacatgtggaggccatcttcagctacctc
actggacaccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctc
tccctgctgctgtcccaggcggtgggctctcagtatggccgggagctgctggcgctgcag
cttggcgattggaacagaatgcagacagactcatttctgcaggaggagaggctacgcatc
ttcgccctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgt
tcagagctggactggaagcgttgcgtggcggttcacctgtggtacatgcttcctcccacc
gcctccatcgctgacgccctggccaagtacgaagccgccttccaaggctctgcagagggt
cagaagtacgcctgcgcccccctgcccccctaccttgaccaatcagtcccgctggacatg
gaggaagaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatac
agcgacagacactacagcctgcaggagttgttggacccgctgacggtgacgtgggagcgt
ctggactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacac
ctgagccccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgct
ggcctctgggacatggccatctatgtactgctgcacatatctgaggacatgctccgtgag
cgtgcggtgagggagatgctccagctgcactgccctttgctggagacggaggagtctgcc
cagaaagagcgcttcctcacagaaagactactgatcccagaacagtggctccacctggcc
aaagctactagagccagaagagagacagacagacacagagaggccctgcacctgtacaga
gcaggccactggaacctctgccacaggctggtcatacaacacctagcctcagattgtatc
atcaatgataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgc
tgtgctgtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtc
atacagaccttacacgccatacaacagatggacagtgctggttataagctggaacgtcta
cacaccgaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaag
gaccgcctcgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtgttg
agtctgcagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatc
ggccgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatca
tacctgagacagctcattgtcagctaa
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