Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423084
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Entry
139423084 CDS
T10872
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139423084
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139423084
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139423084
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139423084
Intermediate filaments
Intermediate filament-binding proteins
139423084
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
PH
PH_9
PH_4
Motif
Other DBs
NCBI-GeneID:
139423084
NCBI-ProteinID:
XP_071030827
LinkDB
All DBs
Position
12:32901721..32927210
Genome browser
AA seq
1607 aa
AA seq
DB search
MLMGAGRDTARDEAQKLHRKWLKHQAFMTELARNKEWLAKIEQEGQELIDEKPELRSVVQ
QKLEEIRECWTDLESTTKAKARALFENNKPEPVVKSYSDLDHQLSGLEKQPPQLEQAHHL
PTFNEQLHKFQSQMGDLYKDVGELGSFQGVCLPQRGSLEKGGEGEGGEQPAVVETRIVRL
IEPLKERRRILLASKEMHQVAQDLEEEILWIQERLPMASSKDYGNNLQSVQQHVKINQTL
QRDLQGRRARVEEVLDRAGIIASLRTPEVDFVREGAGHVRQLWEVLRLEAERRTVMLDVV
LQAQQYYSEAAKVESWLAGQKLHLISEEKGMDEASTLQLLKEHLALEAMVENYAETVGML
SQQCQRQLELAHPDSEGITKQQSHIDRLYVSLKDMVEHRKTKLEQQYWMYQLNREVEELE
KWITEREAVASSTELGQDLEDVTMLQEKFTKFCSETNSIGQQRMEQVNKMVNEMIDCGHT
DAATIAEWKDGLNESWADLLELMETRGQMLTASYQLHKFFTDCKEVLVQIAGKMRQLPEV
RACQASIANPATLQRLMRSFEHALQLLVSQVRQLQENAAQLRAIYAGEKAEAIMSKEQEV
MSAWKELLVSCEASRVQVTSVTDKVQFFSVVREHLMWMEGIMGQIGGDDPRDSSSAEVMM
KQHGELKAKMDGRSKTLQQCVELGKILLAAGNPAAEEIKEKLDTLLAKQKDLSERWDKHQ
EKLQRKKDQFQYAQETVKAEAWLKAKEPLINSSSNSSQAGGAGGEAQAQTDEVEQLILRH
EAFRKAAATWKERFSSLRQLSNAEKLREEQCSKPAPMPLSSRRMFPSSCLTPTFPLATST
LLRQTVQLHIEPRPKQTSLGMAASASTAAQRLGSTMASYTPVMNGSSYHGLDHQSSSGGL
ESSNYPGLNHQACGGVDSSSSYLGVNHQTAPPPVDSSGYLGLNHQSSGGMVSPGYLPQNQ
SSGGMGSPGYLPQNQSSGGMGSLGYLPQNQSSGGTGSPGYLPQNQSSGGLGSSGYLQQNQ
SIGGIVSPGYLAQNQHSGGMGSSGYLAQNLSSGSMGSSGYLAQNHQSSGGMGSSGYLAQN
QGSGVMGSSGFLTQNQCSGIMGSSGYLAQNQNSGGMGSSGYLAQNLSSGGMGSSGYIAQN
QGSGCMGSSGYLAQIQGSGGKGSSSYLPQSGGVMDPKMAYAWQHLKADCMQPRINHIHKA
VNPLLEASRAQREQFGDIPMVDMIGPESGLELLHGRLQRDPRGSRSDPQMDHLRREREYK
LGRQTSSEQEIQARLNELPMIVRQERYRRRLERQSSSEQEGSGKARTPKQDDSSDMESAK
EGSDKRSTEKRATTMAEIVEQAQEREAAQARGETYRPTSSLSAPVTYERPRARDRPKPRR
RPRPKEPEEKRRSRSAPAQSPAQLLPPSHTAHNEGFLYRKHDFDGQQKSPSSKSWVNLYC
VLSKGEIIFYKDAKSITTPYNEETPLDLSVCICDSTMGYKKKKNVFVIKKNDGNDYIFHA
KDEEDLKAWVTNITTSITEHEEIAKWDKPTTSSTDPDRSERKEKSEGDADARSERSEMGG
EVEEEERSEKGEGSEKTGEGSEKADTSERGEMAEGGAGGSSTSGKSK
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgggtgcgggaagagacacggcgcgggatgaggcccagaagcttcaccggaaa
tggctgaagcaccaggccttcatgaccgagctggcccgcaacaaagaatggctggccaag
atagagcaggagggtcaggagctgatcgatgagaagccggagctgcgttcggtggtgcag
cagaagctggaggagatcagggagtgctggacggacctggagagcaccaccaaggccaag
gcccgggctctgtttgagaacaacaagccagagccggtggtgaagagctactcagacctg
gaccaccagctctctggcctggagaaacagccccctcagctggagcaggctcaccatctg
cccaccttcaatgagcagctgcataaattccagtctcagatgggggacttgtacaaggac
gtaggggaactagggtccttccagggggtgtgcctcccgcagcgaggcagcctggagaaa
ggcggggaaggagaagggggtgagcagccagctgtggtggagacccgcatcgtgcgcctc
atcgagcccctgaaggagagacgtcgcattctgctggcctccaaggagatgcatcaggtc
gcccaggacctggaggaagagatactgtggatccaggagcggcttcctatggcttcctct
aaggattacggcaacaacctgcagagtgttcagcagcatgtcaagatcaaccagacgctg
cagagggatctgcagggtcgccgggcgcgggttgaggaggtgttggaccgggcggggatc
atcgcctctctgcggacccccgaggtggactttgtgcgcgagggggcagggcacgtgcgt
cagctttgggaggtgctaaggctagaggcggagaggaggactgtgatgctggatgtggtg
ctgcaggcccagcagtattacagcgaggcggccaaagtcgagtcctggctggcaggccag
aaactgcacctcatcagcgaggagaagggtatggacgaagcaagcaccctgcagctgctg
aaggagcacctggccttggaggcgatggtggagaactacgctgagacagtgggcatgctc
tcccagcagtgtcagaggcagctggaactggcacacccagacagtgaggggatcaccaag
cagcagtcccacatagaccgtctgtacgtgtctctgaaggacatggtggagcacaggaag
accaaactggagcagcagtattggatgtaccagctcaacagagaggtggaggagttagag
aagtggatcactgagcgggaggccgttgccagctccactgagctgggccaagacctggaa
gatgtcacgatgctacaagaaaaattcaccaagttctgctcagagaccaacagcataggc
caacagaggatggagcaggtgaataagatggtgaacgagatgatagactgcggccacacg
gacgcggccacaatcgctgagtggaaggatggactgaacgagtcatgggccgacctactg
gagctcatggaaacccgaggacagatgctaacagcatcataccagctgcacaagttcttc
accgactgcaaagaggtcttggttcagattgctgggaagatgaggcaactaccagaggtg
agggcgtgccaagccagcatcgccaacccggccacgctgcagaggctcatgcgctctttt
gagcacgccctccagctgcttgtctcacaggtaaggcagctgcaggagaacgcggcccag
ctgagggccatctacgccggggaaaaggcagaggccatcatgagcaaggaacaggaagtg
atgtcagcatggaaggagttgctggtttcctgtgaggccagtcgtgtgcaggtcacctcg
gtgacagacaaggtccagttcttctcagtggtgcgtgagcatctcatgtggatggaaggc
atcatgggacagattggaggggacgaccccagggattcgtcctctgcggaggtgatgatg
aaacaacatggtgagctgaaagccaagatggacggccgcagtaagaccctacaacagtgt
gttgagctgggaaagatcctgttggccgcaggcaacccagcagctgaggagataaaggag
aagttggacacactcctggctaagcagaaggatctctctgagagatgggacaaacaccag
gaaaagctacagcgcaagaaggatcagttccagtatgcccaggagacggtgaaggcggag
gcctggctaaaggccaaggagccgctaatcaactctagctccaactccagtcaggctggg
ggtgctggaggagaggcccaggctcagactgacgaggtggagcagctcatcctccgccac
gaggccttccgtaaggctgcagctacctggaaggagcgcttcagctcactgagacagctc
tccaatgcagagaagctgagagaagaacagtgcagcaagcctgccccaatgccactctcc
agtcggaggatgttcccatcgtcctgcctcactccgacctttccccttgctacctcaact
ctgctgaggcagacggtccagctgcatattgagcccaggcccaagcagactagtctgggg
atggcagcctctgcctccactgcagcccagaggttgggttctaccatggccagctacact
cctgtcatgaatggctccagttaccatggactggaccatcagagcagcagcggggggttg
gagagttctaactaccctgggctaaaccatcaggcctgtggaggtgtggacagcagctcc
agttaccttggagtgaaccatcagactgcccccccgccagtggatagttctggctacctt
ggactgaaccatcaaagcagtgggggtatggttagtccaggctacctacctcaaaatcaa
agtagtggtggtatgggtagtccaggttacctgccgcaaaatcaaagcagtgggggtatg
ggtagtctaggctacctgccgcaaaatcaaagtagtgggggtacgggtagtccaggctac
ctaccgcaaaatcaaagtagtgggggtttgggtagttcaggctacctgcagcaaaatcaa
agtattgggggtatagttagtccaggctaccttgcgcaaaatcaacacagtggtggtatg
ggtagctcaggctaccttgcacaaaatctaagtagtgggagtatgggtagttcaggctac
ctggctcaaaaccatcaaagcagtggtggtatgggtagttcaggctacctggctcaaaac
caaggtagtggggttatgggtagttcaggcttccttacgcaaaaccaatgtagtggaatt
atgggtagttcagggtaccttgcgcaaaatcaaaatagtggtggtatgggtagctcaggc
taccttgcacagaatctaagtagtgggggtatgggtagttcaggctacattgcacaaaac
caaggtagtgggtgcatgggtagttcagggtaccttgcgcaaatccaaggtagtggaggt
aagggtagttctagctatctgcctcaaagcggtggggtcatggaccccaaaatggcatat
gcgtggcagcatctgaaagccgactgcatgcagcccaggatcaaccatatccacaaggct
gtcaaccccctcctggaggccagcagggcgcagagggaacagtttggggacatccccatg
gtagacatgatcgggccagagtccggcctggagctcctccatggcaggcttcaaagggac
ccccgcggcagccgctccgacccccagatggaccacctgcggcgggagagggagtacaag
ctgggccgccagacctccagtgaacaggagatccaggcgcggctcaacgagctgccaatg
atcgtgcgtcaagagcgctataggcgacgcctggagaggcagtcgtccagcgagcaggag
ggcagtgggaaggcgaggacaccaaagcaggacgactccagcgacatggagtcagccaag
gaaggctctgacaaacgctcaacagagaagagagccaccacaatggctgagattgtggag
caggcccaggagagagaggcagcacaagccagaggggagacataccgccccaccagcagc
ctctcagcacccgtgacctatgagcgcccgcgcgcccgagaccgccccaaaccccgcagg
agaccccgccccaaagagcctgaggagaagcggcgctctcgctcggctccagcccagagt
ccggcgcaactcttgccgccctcacacactgcccacaacgaaggcttcctgtaccgcaaa
cacgactttgatggccagcaaaagagtcccagcagtaagtcgtgggtgaacttgtattgc
gtgttgtcaaaaggagagatcattttctacaaggacgccaagagcatcaccacaccttac
aatgaagaaaccccactcgacctgagcgtctgtatatgtgatagcaccatgggatacaag
aagaagaaaaatgtcttcgttatcaagaaaaatgatggcaatgactatattttccatgca
aaggatgaggaggacctgaaggcttgggtcactaacatcaccaccagtataactgaacac
gaggagatcgccaagtgggacaaacccacgacctcgtccacagatcccgaccgctcggag
aggaaagagaagtcagagggtgacgcagatgccaggtcagagagatctgagatgggagga
gaggtggaggaggaagagaggtctgagaagggagaggggtccgagaagacaggcgagggc
tccgagaaggcagacacgtcggagaggggtgagatggcagagggaggggcagggggctcc
agcacgtcagggaagagcaaatga
DBGET
integrated database retrieval system
