Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423099
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Entry
139423099 CDS
T10872
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13a
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
ocla
Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139423099
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
139423099
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
139423099
NCBI-ProteinID:
XP_071030849
LinkDB
All DBs
Position
12:complement(34514310..34626799)
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AA seq
2180 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRC
LKADILSVWRRSQRPGRRELWLFWWGDDPNFAELIHHELTAEEDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCSFPFFLHGESNVCTSVEI
NQHQPVYHLSDEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSSKDKDKQGSPSEDKMEDMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVA
PQGSSHCTTVYTGGLQVPASQRDPAISSVTLTPPTSPEEAQTVDSQSAQKWVKMSSAVDG
FSVDSTSHHEGKIPRRLASQVVERVWQECNINRAQNKRKFSATANGTCEEELMEKVGTWD
FVESAQRSHCNCSRHKSLKQRGGTIPGQPQSAGQPTHTQPPTKHKAGGDKPEKGDKQTKR
PQTPFHHRSTACDDVTKETEVATGQRLAMRSQQAGGGFSGLRPSDSVTKPLQLHGGGVGS
GGSSSEMTGSPQPPPLSPHPCERDRGEETGNGSMKNPSTPHSQHFYQPPPDPCLVGQKGG
EGEPRRLDGLSLHFHHPHTSYPSEPLEPTMYVGSAVNLEEDGSPAPWRFFNLPRRKEAEI
PTPTLPGDKLRDRERDEASGGQEVVSVTELMATSKRPLKVSEERVQMYLQRRNQYLAAAI
TDDNDHEPEVDPYAFEDGDVKFSFSDKKDKMGGERQPGKKHKGEDGAAGLSDDAARAAAH
ARTASTSLIHETDLAVSINDLDNLFNSDEDELTPGSRRAVNGTGDKFGNKEPKPATLDPV
SCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGGLEVGQGMTNLDGTSSLGGHFKIE
VEEGYCSPKPQEIKDFSFVYKPELCQAFVGCSMFAPLKTLPSQCLPPIKMPDECIYRPSW
TTVGKQEMLNHPHVPSMAYLNKDSNVPSVGSAMDQDYSQSYTPQTHTPFMSNSAPPSNSG
TGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSPASTPSTCRPLNSVE
PATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYLSDPTGEA
QYPCTCGFSAVVNRRYGNGSGLFLEDELDIIGRDSDVSREAEKRFEALRQHSLERTGGGG
RGERVPDELILLLQDQCTNPFSPMAGMEPDSLAARGPGGCPVPACVRVEERDFHSDCYMA
LEHGRQFMDNMSGGKVDEALVKSTCLHRWSKQNAVDISALCSQDVLRVLLSLQPVLQDAI
QKKRTVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFVVLSPFGLP
YWEKLLLDPFGSHRDMGYLVVCPDNEALLQGAKNFFRDLTAVYESCRLGQHRPISKDHPD
GIVRVGGAAAKKLAEQPVSDWFLKAASGNSDAFAKLKLYAQVCRYDLAPYLAAQPLHSSL
LAQPTPPPASSQSSSMQSSGSSTTTSTGPQNSVTPGGPSLPNSSGSVPSNSTGVANSANS
AASSGSLPSSGMQSAKPSSFPPFGTMGLQNQGLDGGTQGGQLGQQNTGLPGGDSASQAPT
EPLESTMEREKVGVPTDGESHAITYPPAIVVYIVDPFTYEEPEAGSSVWTLGLLRCYLEM
LQFLPPHIRNAVSVQIIPCQYLLQPVRSEERHIYAQHLKSLAFSVFSQCRRPLPGSTNVK
SLTGFGPGLAIDTALKSPERPECLRLYTPPFILAPTKDKQTELGETFGEASQKYNVLFVG
YCLSHDQRWLLATCTDLYGELLETCIISIDVPNRARRKKGSARRSGLQKLWDWCLGLVQM
TSVPWRVVIGRLGRMGHGELKDWSILLSRRNLQSLSRRLKEVCRMCGISASDTPSILSAC
LVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAFVQVAS
SNYTTDTNIDIAFNPIPDGSDAIGIFDLLDQENDLVDPDIINILPASPTTSPVHSPGGHY
HQGGDGSKGQSTDRMESHDEAPNILQQPLALGYLVSTAKAGPLPDWFWSACPQAQNQCPL
FLKASLHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCDPATQDRRS
CLPIHFVVLNQMYNFIMKML
NT seq
6543 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccactccaatctattc
tgtctggctgatctgactgggatcaaatggaagcggtatgtgtggcagggccccacctct
gcgccgatcctcttccccgtgaccgaggaggaccccatcctgtgcagcttcagccgctgc
ctcaaggcggacatactgagcgtgtggcggcggagccagaggcctggacgtagagagctc
tggctgttctggtggggggacgaccctaacttcgcagagttgatccatcacgaacttaca
gctgaggaggacggtgtgtgggagagcggcctgtcctatgagtgcaggacgctcctgttc
aaagccatccacaacctgctggagcgctgtctcatgaaccgcagcttcgtacgcattggc
aagtggttcgtcaagccctacgagaaggatgagaagcccattaataagagtgaacacctg
tcgtgctcgttccccttcttcctccacggggagagtaacgtgtgcaccagcgtggagatc
aaccagcaccagcctgtctaccacctgagtgacgagcacctcaccctggcccagcaggcc
tccagccccttccaagtcatcctgagtccgtttggtctgaacgggactctgacgggtcag
tcgttcaagttgtcagaccctcccacccagaaactgattgaggagtggaaccagttctat
cccatcagccccagctctaaagacaaggacaagcagggctcgccatcggaggacaagatg
gaggacatggactgggaggacgactccctggccgctgtggaggtccttgtcggtggtgtg
aggatggtgtacccagcctgcctggtgctggtgccccagtctgacatcccggctgtggcc
ccccagggttcctcccactgcaccaccgtctacacgggtggactccaagtgcctgcatcc
caacgagaccccgccatctcgtcggtcaccctcacgccccccacatcacccgaggaggcc
cagacagttgactcccagtcggctcagaagtgggtgaagatgtcgtcggctgtggacggc
ttcagtgtggacagcaccagtcatcacgaggggaagatccctcgcaggctagccagccag
gtggtggagagggtctggcaggagtgcaatatcaacagagctcagaacaagcgtaagttc
tcagcgacagccaatgggacctgtgaggaggagttgatggagaaagtaggaacctgggac
tttgtagagtcagcacagaggtcacactgcaactgctccaggcataagtctctgaagcag
cgaggtggcaccatccccggccagccccagtcagcaggccagcccacccacacccagcca
cccacaaagcacaaggctgggggtgacaagcccgagaagggcgacaagcagaccaagagg
ccgcagacgcccttccaccaccgcagcaccgcctgcgacgatgttaccaaggagacggag
gtggcgacgggccagcggctagccatgaggtcccagcaagcggggggtggtttctccggc
ctccgcccctctgacagtgtcaccaagcccctccagctgcatggcggaggggtgggtagc
ggcggctcttcctcagagatgactggttccccccagccccctcccctcagcccccacccc
tgtgagcgcgaccgaggagaggagacaggaaacggctctatgaagaacccctcaacaccc
cacagtcaacacttctaccagccgcccccagatccctgcctggtggggcagaagggtggc
gagggggaaccccggaggctagatggcctgtccctgcacttccaccacccccacacgtcc
tacccctcagagcccctggagcccaccatgtatgtaggctctgctgtaaacctggaggag
gacggctcccctgcgccatggaggttcttcaacctacccaggaggaaagaggccgagata
cccacgccaacgctgcctggggacaagctgagggacagggagagagacgaggcctcggga
ggacaagaggtggtttctgtcacagaactgatggccacatccaagcggcctctgaaggtg
tccgaggagcgcgtgcagatgtacctccagcggaggaaccagtacctggccgccgccatt
accgacgacaatgaccacgagcctgaggtggatccgtacgccttcgaggacggggacgtc
aagttttccttctctgacaagaaggacaagatgggcggcgagcgccagcccgggaagaaa
cacaagggggaggatggagcagcaggtctgtcagatgacgcagcgcgggcagccgcacac
gcacgcactgcctccaccagtctgatccatgagacagatttggctgtgtccatcaacgac
ctggacaacctcttcaactcagacgaggacgaactcacgcctggttccagacgagcagtg
aatggaacaggtgataaatttggcaacaaggaaccaaagccagccactctggacccagtc
tcttgcatcagctcggcagatttgcaccagatgttccccactccccccagcctggagcag
cacatcatgggctactctcccatgaacatgggcagtaaggagtacggcggcctggaggtc
ggacagggcatgaccaacctggacggtacctcgtcccttgggggacacttcaagatcgag
gtggaggaaggctactgcagccccaagccgcaggaaatcaaggacttctcatttgtgtac
aagccggagctgtgccaggcatttgtgggctgctccatgtttgcccccctcaagaccctg
cccagccagtgtctgccccctatcaagatgccagacgagtgcatctacaggcccagctgg
accaccgtgggcaaacaagagatgctcaaccacccccatgtgccttccatggcctacctc
aacaaagacagtaacgtccccagtgtgggcagtgccatggatcaggactacagccagagt
tacacaccccagacccatactcccttcatgtccaacagtgccccccccagcaacagtggc
acgggcatcctgccctcaccggccaccccgcgcttctccgctcccaccccacgcactccc
cgtaccccacgcacccccagagggcccgccagtgtccagggttcgctcaagtacgagaac
tcggacctctactcgcctgcctctaccccctccacctgtcgacccctcaactcagtggaa
cctgccaccgtgccctccatccccgaggcccacagcctctacgtcaccctcatcctctcg
gagtccgtcatgaacctcttcaaggactgcaacttcgacagctgctgcatctgcgtgtgc
aacatgaacatcaagggggccgacgtgggggtgtacctgagcgaccccacgggagaggcc
cagtacccttgcacctgcggcttcagcgctgtggtcaaccgccgctacggcaacggctcg
ggcctcttcctggaggacgagctggacatcatcggacgcgactcggacgtcagccgcgag
gcggagaagcggttcgaggcgctgcggcaacactcgctggagaggacagggggaggaggg
aggggggagagggtaccagacgaactgatcttactgctacaggaccagtgcaccaacccc
ttctctcccatggctgggatggagcctgacagcctggcagcgcgggggcccgggggttgt
ccagtgccagcctgtgtgagggtggaggagagggacttccacagtgactgctacatggct
ctggagcacggccgccagttcatggacaacatgtcaggaggcaaggtggacgaggccctg
gtcaagagcacctgtctccaccgctggtctaaacaaaatgccgtggacatcagtgctctg
tgctctcaggacgtgttgcgggtgctgctctccctccagcctgtactccaggatgccatc
cagaagaagaggacggtgcgctcctggggcgttcagggacccctcacctggcagcagttc
cacaagatggctggacggggctcctacggcacagatgagtctcctgagcccctgcccatc
cctaccttcctggtgggttatgagtatgactttgtggtgctgtcgccattcggcctgccc
tactgggagaagctgctgctggaccccttcggctcccacagggacatgggctatctggtg
gtctgtcccgacaacgaggccctgctccagggggccaagaacttcttcagggacctcacc
gccgtctatgaatcatgtcgtctgggccaacaccgccccatctcaaaagaccacccggac
ggcatcgtgagagtgggtggagcggccgccaagaagctggcagagcagcctgtcagcgat
tggttccttaaggctgccagcggtaacagcgacgccttcgccaagctcaagctttacgct
caagtctgccgctacgaccttgctccatacctcgctgcgcagcctttacacagctccctc
ctcgcacagcccacaccccctcctgcctccagccaatcctcatccatgcaatcctccggc
tcctccaccaccacctcgaccggcccccaaaactcagtgacccccggaggcccctccctc
cccaacagcagcggcagcgtgcctagcaacagcacgggtgtagccaacagtgccaacagc
gcggcatcatcagggagcctgcccagcagcgggatgcagtctgccaagcccagctctttc
cctccctttgggaccatgggcttgcagaaccagggcctggatggtggcacccagggaggg
cagctgggccagcagaacacaggactccccgggggggactcagccagccaggcacccact
gaacccctagagagcaccatggagcgagagaaggtgggtgtgccgacggacggagagtct
cacgccatcacataccccccggccatcgtggtgtacattgtggaccccttcacctatgag
gagcctgaggcggggtccagtgtgtggaccctgggcctgctgcgctgctacctggagatg
ctccagttcctcccaccacacatccgcaacgctgtctctgtacagatcatcccgtgccag
tacctgctccagccggtgaggagcgaggagcgtcatatctacgctcaacacctcaagtcc
ctggccttctcagtgttctcccagtgcaggcggcccctccccggatccaccaacgtcaag
tcactaaccggctttggccctggcctggccatcgacactgcactgaagagcccagagaga
ccagagtgtttgcggctatacacgcctccgttcattctggcgccgaccaaggacaagcag
acagagctgggggagacgtttggggaggcctctcaaaagtacaacgtgctgtttgtgggc
tactgcctgtcccacgaccagcgctggctcttggccacctgcaccgacctgtacggagag
ctgctggagacctgcatcatcagcatcgacgtgcccaacagagcgcggaggaaaaaaggc
tctgcccggaggtcgggcctgcagaagctgtgggattggtgcttggggctggtgcagatg
acatcagtgccatggagggtggtgattggtcgactgggcagaatgggacatggcgagttg
aaagactggagtattctgttgagcaggaggaacctgcagtctctgagtcgccgtctcaag
gaggtgtgtcgtatgtgtggcatctctgcctccgacactcccagcatccttagcgcttgc
ctagtcgccatggagcctcagggctcctttgtcatcatgccagactctgtgtctacaggc
tcagtgttcggccgcagcaccactctgaacatgcagacgtcccagctgagcactcctcag
gacacgtcctgcacccacatcctggtgttccccacctcagcctttgtccaggtggctagc
tccaactacactactgacaccaacatagatatcgccttcaaccccatccccgatgggtcg
gacgccattgggatctttgacctgctggaccaggagaacgacctggtggaccccgacatc
atcaacatcctgcccgcctcgcccaccacctcgcccgtacactcccccggcggccactac
caccaggggggagacggcagcaagggccagagtacagaccggatggagtcccacgatgaa
gctcctaacatcctgcagcagcccctggccctgggctacttggtgtccacagccaaagcc
ggcccactgcctgactggttctggtcagcctgccctcaagctcagaaccagtgtcccctt
ttcctcaaggcctctctgcatctccacgtgtcttcagtgcaatcagatgaactgctgcac
agcaaacactcccacccactcgactccaatcagacctcagacgtactcagatttgtgctg
gagcagtacaatgccctttcctggttgacgtgtgaccccgcgacgcaggatcggcgctcc
tgtctgcccatccactttgtggtgctcaaccagatgtacaacttcatcatgaagatgttg
taa
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