Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423104
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Entry
139423104 CDS
T10872
Name
(RefSeq) clathrin, heavy chain a (Hc)
KO
K04646
clathrin heavy chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
ocla04144
Endocytosis
ocla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139423104
04142 Lysosome
139423104
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139423104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139423104
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139423104
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
139423104
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139423104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
139423104
NCBI-ProteinID:
XP_071030853
LinkDB
All DBs
Position
12:complement(34861400..34923553)
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASVL
LETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
VQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALSNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELMEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYASESKDTELAEELLGWFLME
DKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLSKVDKLETSESLR
KEEEQATETQPIVYGTPQLMLTAGPSVPVPAQQAYGYGYQAPAGYPQNPQAQPGFGYSM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctgcctatccgctttcaggagcacctgcagctccaaaacttggggatc
aacccggccaacatcgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgagagaaggtgggcgagcaagcgcaggtggtgatcatagacatggccgaccccaacaca
cccatccgcaggcctatctctgcagacagcgccatcatgaaccccgcctccaaagtcatc
gcacttaaagctgccaaaacccttcagatctttaacattgagatgaagagcaagatgaag
gcccacaccatgaccgacgacgtcaccttctggaagtggatctccctcaacacagtggca
cttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatcaaa
gtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgatgcc
aagcagaagtggctgctgctcatcggcatctccgcacagcaaaaccgtgtggtgggcgcc
atgcagttgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgccggc
ttcgcccagttcaaaatggagggcaacacagaggagtccacactgttctgctttgctgtg
agaggacaggccggaggaaagttgcacatcattgaggtgggcaccccacccacagggaac
cagccttttccaaagaaagcagtggacgtgttcttccctccagaggctcagaatgacttc
cctgtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatatggc
tacatccacctgtacgacctggagactggcacctgcatctacatgaacaggatcagcggg
gagaccatctttgtcacggccccacacgaagccaccgctgggatcatcggggtcaacagg
aaaggacaggtcctgtcggtgtgtgtggaggaggagaatatcatcccctacattaccaat
gtgctccagaacccagacctggccctgcgcatggctgtccgtaacaatctagctggggcc
gaggagctgttcgcacgcaagttcaacaacctgtttgctgggggaaactactcagaggct
gccaaggtggctgccaacgcaccaaagggtatcctgcgtactccagataccatccgtaag
ttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggcatc
ctgctggaccagggccagcttaacaagtttgagtccctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggaatgttct
gaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctacctg
agggccaacgtacccaacaaggtcatccagtgctttgctgagaccggacagttccccaag
atagtcctgtatgccaagaaggtgggctacactccagactggatcttcctgctgaggaat
gtgatgaggatcagtccagaacagggcctgcagttctcacagatgctggtccaggacgaa
gagcctctggctgacatcacacagatcgtggatgtgttcatggagtataacctgatccag
cagtgtacctcattcctattggacgccctgaagaacaacaggccatctgaggggccgctg
cagacacgcctactggagatgaacctcatgcacgccccacaggttgctgatgctatcctg
ggcaaccagatgttcaccaactacgaccgtgcccacatagcccaactgtgtgagaaggct
ggcctgctgcagagggctctggagcactacactgacctatacgacatcaagcgggccgtg
gtgcacacacacttgctcaacccagagtggctggtgaatttctttggctccctctcagtg
gaggactctctagagtgcctgagggccatgttgtctgccaacatccgtcagaacctgcag
atttgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctcaccgag
ctcttcgagtccttcaagagctttgagggtctgttctacttcctgggttccatcgttaac
ttcagccaggatgcagaggtccacttcaagtacatccaggctgcctgcaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgacccagaacgagtcaag
aatttcctcaaggaggccaagctcaccgaccagctcccgctcatcatcgtgtgtgaccgc
ttcgactttgtccacgacctggtcctctacctgtaccgcaacaacctgcagaaatacatt
gagatctatgtgcagaaagtgaaccccagccgtctgccggtggtgattggagggcttctg
gacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacagttc
tccactgacgaactggtggctgaggtggaaaagaggaacaggctgaagcttctcctgccc
tggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctggcc
aagatctacatcgacagtaacaacaaccctgagcgcttcctgcgtgagaacccctactac
gatagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgtgtggcc
tacgagagaggacagtgtgaccaggaactcatcaatgtgtgcaatgagaactccctgttc
aagagtctgtctcgctacctggtacgtcgcagggacccggacctgtgggccagcgtgctg
ctggagaccaaccccttcagaagaccactcatcgaccaggtggtgcagaccgccctatct
gagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagacttg
cccaatgaactcattgagctactggagaagatcgtactggataactccgtcttcagtgaa
cacagaaacctgcaaaacctgctgatcctgacggccataaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctggataattatgacgccccagacatcgccaacatcgccatc
agcaacgagctcttcgaggaggcattcgctatcttcaagaagtttgacgtcaacacatcc
gctgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagttcgccgag
cgttgcaacgagccggccgtgtggagccagctggccaaggctcagctgcagaagggcctg
gtcaaggaggccattgactcctacatcaaggctgacgacccctctgcctacatggaggtg
gtacaggccgccgaccagagtggtaactgggaggacctagtgaagttccttcagatggcc
cgtaagaaggcccgggagtcctatgtggagacagagcttatctttgccctggccaagacc
aaccgcctggctgagctggaggagttcatcaacggacccaacaacgcccacatccaacag
gtcggcgaccgctgttatgacgagaaaatgtacgatgcggccaagttactgtacaacaac
gtgtccaacttcggccgcctggcgtccaccctggttcacctcggggagtaccaggcggcg
gtagacggggcacgcaaggccaacagcactaggacctggaaggaggtgtgcttcgcttgc
gtggatgggaaggaattccggctggcccagatgtgtggcctccacatcgtggtgcatgct
gatgaactggaggaactcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctggggctggaacgggctcacatgggtatgttcactgagctg
gccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggttctgcgggcggcggagcaggcccacctgtgggcggag
ctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatgaac
caccccacagacgcctggaaggagggccagttcaaagacattatcaccaaggtggccaac
gtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactgaat
gacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttcagc
aaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaacaac
aagtctgtcaatgaagcacttagcaacctcttcatcacagaggaggactatcaggctctg
aggacgtctatagatgcctatgacaacttcgacaacatctcgctggcccagcgcctggag
aaacacgagctgatggagttcaggagaatcgctgcgtacctcttcaagggtaacaaccgc
tggaaacagagtgtggagctctgcaagaaggacagactctacaaggatgccatgcagtac
gcgtcagagtccaaggacacggagctggctgaggagctgctgggctggttcctgatggag
gacaagaaggagtgctttgccgcctgccttttcacctgctacgacctgctgaggccagac
gtggtgctggagactgcctggaagcacaacatcatggacttctccatgccctacttcatc
caggtcatgagagagtacctctccaaggtggacaagctggagacctccgagtccctacgg
aaagaggaggagcaggcgacagagacccaacccatagtctatggcacaccccagctgatg
ctgactgctggccccagtgtgcccgtaccagcccagcaggcctatggctatggttaccag
gcccctgcgggctatccccagaaccctcaggcacagccaggcttcggctacagcatgtga
DBGET
integrated database retrieval system
