Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423157
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Entry
139423157 CDS
T10872
Name
(RefSeq) syntaxin-1A-like isoform X1
KO
K04560
syntaxin 1A
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
139423157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139423157
Membrane trafficking [BR:
ocla04131
]
SNARE
Syntaxin (Qa)
Stx-PM
139423157
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
Syntaxin_2
PspA_IM30
Laminin_II
Relaxase_C
CCDC84
DUF16
Motif
Other DBs
NCBI-GeneID:
139423157
NCBI-ProteinID:
XP_071030957
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All DBs
Position
12:38469346..38503842
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AA seq
326 aa
AA seq
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MKDRTHELRVGKETEEEDDVAVNMEKDRFMDEFFVQVEEIRGFIEELSEKVEEVKRQHSA
ILAAPNPDEKTKAELELLMTDIKKFANKVRSKLKSIEQSIEHEEALSRSSADLRIRKTQH
STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRNTTNEELESMLESDNPAIFTSG
IIMDSNITQQAMNEIETRHTEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHS
VDYVERAVSDTKKAVKYQSKARRIQCRMGWDPAHIEVMLVQLLSVQWGTVPVPSYWSHSP
LPAPNQTKHWTHKRTFKVNMSRIDIN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgtacacacgagctaagggtggggaaggagactgaggaagaagatgatgtg
gcagtcaacatggaaaaagatcgatttatggatgagttctttgtacaggtggaggagatc
cgaggcttcatcgaggagctctcagagaaggtggaggaggtgaagagacaacacagcgcc
atcttggctgcccccaatcctgacgaaaaaacgaaggcagagctggagctgctgatgacg
gacataaagaagtttgcgaacaaagtgcgctccaagttaaaaagcattgaacagtccata
gagcatgaggaggctttaagcaggtcgtctgcagatctgaggatacgtaagacacagcat
tccacgttgtctcggaagtttgtggaggtgatgtcagagtataatgccacgcagtcggac
taccgggaacgctgcaagggccgcatccaaagacaactggagattactggtaggaacaca
actaatgaggaactggagagcatgctggagagtgacaaccctgccatcttcacatcaggg
atcatcatggactccaacatcacccagcaggccatgaatgagattgagacgagacacact
gagatcatcaagctggagaacagcatcagagaacttcacgacatgttcatggacatggcc
atgctggtggagagccagggggagatgatagatcgtatagagtacaacgtggagcactca
gtggactatgtagagagggccgtgtctgacaccaagaaggcagtgaagtaccagagtaaa
gccaggaggatacagtgcaggatgggatgggaccctgctcacatagaagtgatgcttgta
cagttgttgtctgtgcaatggggaacagtgcctgtcccttcatattggtcacacagccct
ctcccagctcctaaccagactaaacattggacccacaaacgcacttttaaagtgaatatg
tcacgtattgacatcaattga
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