Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423185
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Entry
139423185 CDS
T10872
Name
(RefSeq) nuclear envelope pore membrane protein POM 121-like
KO
K14316
nuclear pore complex protein Nup121
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139423185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139423185
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139423185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POM121
Motif
Other DBs
NCBI-GeneID:
139423185
NCBI-ProteinID:
XP_071031015
LinkDB
All DBs
Position
12:complement(39982784..39995832)
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AA seq
1252 aa
AA seq
DB search
MSSREKRLIALISLVVCATAIFCLVLYYIPTLLYIAFIIGVCCVACYYHSGESLYVRLGP
HPRRGLTIPPVLRRWLPGIANGVPTAGRVRSRTVKDDVRESVVFTGQRRFDSAICRKDAT
HSDSFILSPRDILMGSYIGKAKSPASVVGRPRAGASSGANTNAREQLTLRERLARPNQAV
ITPNRRLSFGGEPLGAMGRFIITPQRHYPLQQMGTSSVGILPPTQWDGFRKKNILTPRNS
PAVHSPVTVKIARPDHNTTQSQLFDHLNSPGVLGSPGLGAPADPCSRETVLSVLKESRKR
VVEDDRSFTAGQKSKRRRHDSSGSAHLAFEPLLPNGAPSQLVLNSLKRGLNAMVEESTMK
RSRTSSISSVSCGLTPSGTLGSVRNSIRSSLSSSQGITQWKKASTRSLSPLSSPGSSRSQ
TPERASKKPREEDTRSPSSVSLARSDKTLTDPAPTTGKLSPAPEVPVASASSDSAGSGKR
KRKIPLVSSRRGDQISLPPPPELGYTITVKDLDQEKKAALSQINTVLKEPEPEKPAPVVT
TSSKPPVSDNPTPTLLASHLTVSMPTRVAAPIPVINLDPVPSNTVNTAPTSTAFPVTNTP
AANPLLESLKMMRNNPLTSAAADNPTVTTPAPLVPAEQKSKTRLTAPQATLPSLSQPALP
SLSQPALPSLSQPALPSLSQPALPSLSQPALPSLSQPAPPSLSQPAPPSLSQPAPPSLSQ
PAPPSLSQPAPPSLSQPAPPSLSQPAPPSLSQPAPPSRSQPAPPSRSQPASTIPSAFTQA
LSQVTKATSSVPILGGASLFGMANPLTAPSSSLGPTTTATTETTSSNNPLLASVFKPIFG
ATTLAPEGTPALPTFKPIFGSATATSAFGQPASTSAPSNASASAIVFSRLTNSSTVAPAA
SLFTGLSNSTNPATPPSVKSLFGNWSALPATTAATTTATGSTFQFGTASTTAPGPTLSST
AAATTSNSSFSFGAMTTTSAATQPTPSATTQGGFTFGQPVATQSSTTASFGGFGMATAAA
ATAPAPANQSTFTFGKSSFEAPAASVFPGAIQAPAATAAANPFTFGSPATGATPAPFAFG
AAATTATSTFGTTTKLAFGANSTGFAFGNTTGTPAAPAFGSATQTVGILPASAPTFSFGG
VSTQQAPATPAQPATGGFNFGAAISGTQFGTSNPTTQTPGFNFGMSTPAFGQSTAAGPVP
FGSPGTPVQGFSAMGSSSFGSPSAPSFSIGAGSKTSGARQRLQARRQHPRKK
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaagagagaagcggttaatagcgcttatctctctcgtggtctgtgctaccgca
atattctgtctagttctctattatattccaacattgctttacatagctttcattattgga
gtttgttgcgttgcctgttattatcacagcggagaatctctttacgttaggttaggccct
catccacgccgtggtctgacaattccacccgtgctgcgacgctggttgccagggattgca
aacggagtacccacagcgggaagagttagaagtcgcaccgtcaaggatgatgttagggaa
tcagtagtatttactggccaacgacgtttcgatagcgctatttgtcggaaagacgcgaca
cacagtgactcatttattctcagtcctcgggatatactcatgggaagttacattgggaag
gcaaaaagtcctgcctcagttgtggggaggccgcgagcgggtgcaagttcgggtgctaac
accaacgcacgagaacagttaactttacgcgaaagattggcacgacccaaccaggctgtc
attactccgaacagacgactgtcattcgggggcgagccccttggcgctatgggcaggttc
atcatcactccccagcgccactaccccctccagcagatgggcacctcctctgtgggcatc
ctgcccccgacccagtgggacggcttcagaaagaagaatattctcacccctcgcaactct
ccggcagtccacagtccagtcacagtgaagatcgctaggccagatcacaacaccactcaa
tcccagttatttgatcatttgaactccccgggggtccttggctctccaggcctgggggcc
cctgcagacccctgctccagggagactgttctgagcgtgctcaaagagagtcgcaaaaga
gtggtggaagatgacaggagcttcactgcagggcaaaagagcaaaaggaggcgccatgac
agcagtgggagtgctcacttggcatttgagccactactgcccaatggagctccatcacag
ctggtgctgaattctctgaagcgagggctgaatgctatggtggaggagtcaacaatgaag
aggtcacgcacctcctccatcagctctgtgagctgtggcctgacccccagcggcaccctg
ggctcggtccgcaactccatccgtagctccctcagctcctcacaaggcattactcagtgg
aaaaaagcctccacccgcagtctctccccgctttccagccctgggtcgtcccggtcccag
accccagagagagcctctaaaaagcccagggaagaggacactcgctcacccagctccgtg
tccttggcgaggtctgacaagacgttgacagacccagcaccaaccactgggaagctgtct
ccagcccctgaagtccctgtggcttcagcctcgtcagactctgccggtagtgggaaacgg
aaacgtaagattccgctggtgtccagccgtagaggagaccaaatctctttgcctccacct
cctgagttgggctacaccatcacggtgaaagacctggatcaggagaagaaagccgctctc
agccagatcaacacagtcctcaaagagcctgagccagagaagcctgctccggtagtgacc
acatcttctaagcctcccgtgtcagacaaccccacacccaccctgctggccagccatctt
accgtatcaatgcctactcgtgtggcggctcctatccctgtcatcaacctagaccccgtc
ccctcaaacaccgtcaacacggccccaacctccacagctttccctgtcaccaacacccct
gcagccaaccccctcctggagtctctgaaaatgatgaggaacaaccccctcaccagtgct
gctgctgacaatcctacagtgacgacccctgcaccgctggtgcctgcagagcagaagtcg
aagacccgcttgactgctcctcaggccacacttccctccctctctcagcctgcacttccc
tccctctctcagcctgcacttccctccctctctcagcctgcacttccctccctctctcag
cctgcacttccctccctctctcagcctgcacttccctccctctctcagcctgcaccaccc
tccctctcccagcctgcaccaccctccctctcccagcctgcaccaccctccctctcccag
cctgcaccaccctccctctcccagcctgcaccaccctccctctcccagcctgcaccaccc
tccctctcccagcctgcaccaccctccctctcccagcctgcaccaccctcccgctcccag
cctgcaccaccctcccgctcccagcctgccagcacaattccctctgccttcacccaggcg
ctgagccaagtcaccaaggccaccagcagtgtccccatcctgggtggagcgagcctgttt
ggaatggccaatccactgactgccccgtcctcatcactgggccccaccacaaccgccacc
acagaaacaaccagtagtaataatcccctcctggcctctgtgttcaagcccatcttcggg
gccacgaccttagccccagagggcacacctgctcttcccacctttaaacccatatttgga
agtgccacagccaccagtgctttcggacagccagcttccacctcagccccctccaatgcc
agtgcgtctgccatagtgttcagcaggctaaccaacagcagtacagtggccccagccgcc
tccctgttcactgggctgtctaatagcaccaacccagccaccccgccatctgtcaagtct
ctgtttggaaactggagtgcgctgcctgcaacgactgctgccacaaccactgccacagga
agtaccttccagttcggcaccgcctccaccacagctcctggacccactctcagctccact
gcagccgccaccactagcaacagcagcttttcgtttggtgcgatgaccaccacctctgcc
gccactcaacccaccccctcagctaccacccaggggggattcacctttggccagcctgta
gccacccagagctctaccactgcatccttcggtggctttggcatggccactgcagccgca
gctactgctcctgcacctgcaaaccagtccactttcacatttgggaagtcgtcgttcgaa
gctccggcggcatcggtgttccccggtgcgattcaggccccggctgctactgcggcagct
aatcctttcacatttgggtcacctgccactggggccacccctgccccttttgcttttggt
gctgctgccactacagcaacgtctaccttcgggaccaccactaagctggcatttggagcc
aactccacaggttttgcatttggcaacaccacgggcaccccagcagcccctgcctttggc
tctgccacccagactgtcggcatactcccagcctccgccccaactttctcgtttggtggt
gtgtccacacagcaggcccctgctacccctgcccagcctgccaccggaggattcaacttc
ggcgcagccatttcaggcactcagtttggaacctctaaccccacaacacagacaccaggc
ttcaactttgggatgtctacccctgcttttggccagagcacagctgcaggtcctgtcccc
tttggaagcccaggaactccagtccaaggattcagtgctatgggatcctcatcattcggc
tctccatcagctccttcgttctccattggcgctggctccaaaacatcaggggcgcgccag
aggctacaggcccgaaggcagcaccccaggaagaagtag
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