Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423196
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Entry
139423196 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase rififylin-like isoform X1
KO
K20804
E3 ubiquitin-protein ligase RNF34 [EC:
2.3.2.31
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139423196
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
139423196
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
139423196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF34L-like_3rd
SAP_RNF34_RFFL
FYVE_CARP1-2
zf-C3HC4_3
ARMET_C
FYVE_2
Prok-RING_4
zf-RING_5
zf-C3HC4
SDE2_2C
Sigma70_ner
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
139423196
NCBI-ProteinID:
XP_071031025
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All DBs
Position
12:complement(40456431..40469448)
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AA seq
343 aa
AA seq
DB search
MWTSCCSWSCLEPTATVEENGSSWRQAYTNSGNSQSPISPELLCKACGGHFDTIAIKHVC
VDCKKNFCGRCSVQLEPPRPRLCHTCQRFHGTLFDRAQLMRLKVRELRDYLHLHEVPTQT
CREKEELVELVLGQQTPSTSSETVSSQPGAHNNVPSPDTPSPPQTQGPTSPDTLSPEQPE
QSAPEAESEQISDEEEEEEEDEDEESSDSEETLMPGRRASLSDLSRVEDIEGLSVRQLKE
ILARNFVNYKGCCEKWELMERVTRLYNDQKDLQNLVSNTKNEEDPAAPKSQEENLCRICM
DSPIDCVLLECGHMVTCSKCGKRMSECPICRQYVVRAVHVFRS
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgtggacatcctgttgtagctggtcctgtttggaacctaccgccacagtggaagaaaac
ggcagctcatggcgccaggcctacacaaactcgggcaacagccaatccccgatctctccc
gaacttttgtgcaaggcctgcggaggccattttgacaccatcgctataaagcatgtctgt
gtggactgcaagaagaacttctgtggccgctgctcggtgcagctggagccgccacgcccg
cgcctctgccacacatgtcagcgatttcacggaaccctcttcgaccgcgcccagttgatg
agactcaaggtgcgggagctgcgtgactacctccacctgcacgaggtgcccacccagaca
tgccgggaaaaggaggagctggttgagctggtcttgggccagcagacccccagcaccagc
agtgagactgtgtcctcccagcccggggctcacaacaatgtcccctccccagacacaccg
tcccctccccagacacagggccctaccagccccgacacattgagcccagagcagccagaa
caatcagcccctgaggcagaatcagagcagatctcggatgaggaagaagaagaggaggag
gatgaggatgaagagtcatcggacagcgaggagaccctgatgcccggccgcagagcctct
ctgtctgacctgagccgcgtggaggatatcgagggcctgagcgtgcgccagctcaaggag
atcttggcccgcaactttgtcaactacaaaggctgctgcgagaagtgggagctgatggag
agggtcacccgcctctacaacgaccagaaggaccttcagaacctagtttcaaatacaaaa
aatgaagaagaccctgcagctcccaagagccaggaggagaacctctgtcggatctgcatg
gactctcccattgactgtgtgctgctggagtgtggccacatggtcacctgcagcaagtgt
ggcaagcgcatgagcgagtgccccatctgcagacagtacgtggtacgggcggtgcacgtc
ttcaggtcctga
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