Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423205
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Entry
139423205 CDS
T10872
Name
(RefSeq) 5-hydroxytryptamine receptor 3A-like
KO
K04819
5-hydroxytryptamine receptor 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139423205
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139423205
Ion channels [BR:
ocla04040
]
Ligand-gated channels
Serotonin (5-HT3)
139423205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
139423205
NCBI-ProteinID:
XP_071031042
LinkDB
All DBs
Position
12:40662381..40667947
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AA seq
493 aa
AA seq
DB search
MRVSALWTALVLLLIQGTARACTVKKLSNNTGRFANATLVRLSEYLSAGYKKGVRPVRNW
RNCTMVAIDLMVYSILSVDEKNQVLTTYIWYRQEWTDEFLVWKPEDFDDVNQMSIPTANV
WVPDILINEFVDVGKSPDIPYVYVTHYGLVRNYKPIQVVTACTLNIYNFPFDVQNCSLTF
QSWLHTLNDIDLKLMRSAEELKVDKSVFMNQGEWELLHVLSKYKRFSLDNIDSYAEMKFN
VVIRRRPLFYTVNLLLPSIFLMVMDLVGFYLPPDSGERVSFKITLLLGYSVFLIIVSDTL
PATAIGTPLIGVYFVVCMALLVISLTETVLIVRLVHKQDLQPHVPQWLKHLVLERATVLL
CIRNKHSLCSMLSRDSDHLGHYKENNISPARCNHHHHLHHTCESGRGGGDIMERGLGGLS
VVRDNMPPVMDNILQEISSIRGFLEKRDESRDIAKEWLQVGYVLDVLLFRVYLVAMLAYS
ITLGTLWSVWQYA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagagtttcagcactctggacagcgctggtcttgcttctgattcaaggcaccgcgaga
gcctgcacagtcaagaaactgagcaataataccggacgctttgccaatgccaccttggta
cgcctctccgaatacttgagtgctgggtacaagaagggtgtgcgacccgtgcgcaactgg
cgaaattgcacaatggtggccatcgaccttatggtgtactctatcctcagtgtggatgag
aagaaccaggttctgacaacatatatatggtacaggcaggaatggacagacgaattcttg
gtatggaagccagaggattttgatgatgtgaatcaaatgtccataccaactgcgaatgtg
tgggtgcctgacatactaatcaacgagtttgtggatgtggggaagtctccggacattccc
tatgtgtacgtgacccattatggactagtgcgcaactacaagcctatccaggtggtgacc
gcctgcactctcaacatctacaacttcccattcgacgtccagaactgcagcctgaccttt
cagagctggctccatacccttaatgacatcgatctcaagctgatgaggagcgcagaggaa
ctcaaggtggacaagagtgtcttcatgaaccagggggagtgggagcttcttcacgtcctg
tctaaatacaagcgcttcagtctggacaacattgactcctatgcagagatgaagttcaat
gtggtgatccgacgcagacctctgttctacactgtgaacctgctgctgcccagcatcttc
ctgatggtgatggacctggtgggcttctatctccccccggacagtggagagagggtgtcc
ttcaagatcaccctgcttctgggatactccgtcttcctcatcatcgtctctgacacgctg
cccgccaccgccatcgggacgccgctcataggtgtatactttgtagtgtgcatggccctg
ttggtgatcagcctgacagagacagtgttgatagtgcgactggtgcataagcaggacctg
cagccccacgtaccccagtggctcaaacacttggtgctggagcgggccacagtcctcctc
tgcatccgcaacaaacacagcctgtgctccatgctgtccagggactctgaccatctgggc
cactacaaagagaacaacatcagtccagctcgatgcaatcaccaccaccaccttcaccac
acctgcgagagtggccgtggtggcggggacatcatggagcggggtctggggggcctgtct
gtggtgcgtgacaacatgccgcccgtcatggacaacatcctgcaggaaatctcatctatc
cgcggcttcctggagaagagggacgagtcccgggacatcgccaaggagtggctgcaggtg
ggctacgtgctggacgtcctgctcttcagggtctacctggtggccatgctggcctacagc
atcaccctggggaccctctggtccgtgtggcagtacgcctga
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