Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423208
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Entry
139423208 CDS
T10872
Name
(RefSeq) cell adhesion molecule 1-like isoform X1
KO
K06781
cell adhesion molecule 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139423208
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139423208
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Nectin family
139423208
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
Ig_5
C1-set
C2-set_3
Adhes-Ig_like
Syndecan
Motif
Other DBs
NCBI-GeneID:
139423208
NCBI-ProteinID:
XP_071031057
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Position
12:41637415..42072323
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AA seq
441 aa
AA seq
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MAITGNGSLATLLFLFMIPAALHKGAAQYPVQSQNLVTDNVAVVEGEVAVISCRVKNNDD
SVIQLLNPNRQTIYFRDVRPLKDARFQLVNFSDNELRVSLSNVTLSDEGRYVCQLYTDPP
QEAYADITVLIPPGNPIIESREGQVIEGNETEMTCTAMGSKPAATIRWMKGDKELQGKSK
VEEMYDTMFTVTSQLTFTVTKEDDGVPVVCIVDHPAVKDIQAQTYLVVHYKPEVKIVVEF
PDGLPREGQNMELSCQAKGKPHPQQINWVKVDDDLPSHALITGPDLYIENLNKTYNGTYR
CFAANSVGESYDDYILYVYDAPTTTPIPTTATTTTPTTTTISLPEATADTTPSTEPAAHD
SRAGEGAPRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADAD
TAIINAEGGHNNSDEKKEYYI
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcacaggcaacggatctctcgctactcttctctttttgttcatgattccagca
gctcttcataaaggagctgctcagtacccagtccagagtcagaacctggtgacggacaat
gtggcggtggtggagggagaggtggccgtcatcagctgccgggtgaagaacaacgacgac
tcggtcatccagctcctcaaccccaacagacagacaatctatttcagagacgtccgaccc
ctgaaagatgcccgcttccagctggtgaacttctcggacaatgagctgcgggtgtctctg
tccaacgtgaccctgtctgacgaggggagatacgtgtgccagttgtacacagaccctcca
caggaggcctacgctgacatcactgtgctgatccctccaggcaacccaatcatcgagtcc
cgggaggggcaggtaatcgagggcaatgagacagagatgacctgcaccgccatgggcagc
aagcccgccgccaccatcagatggatgaagggagacaaagagctccaaggtaagtcgaag
gtagaggagatgtacgacaccatgttcaccgtgaccagccagctgacgttcaccgtcacc
aaagaggatgacggtgtgcctgtggtgtgcattgtggatcacccagccgtcaaagacatc
caggcccagacgtaccttgtggttcattataaaccagaggtgaagatcgtagtggagttt
cctgacgggctgccaagggaaggacagaacatggagctgtcgtgccaggccaaaggcaaa
ccccatccccagcagatcaactgggtgaaggtggacgacgaccttccctcacacgccctc
atcaccggcccggacctgtacatcgagaacctcaacaagacctacaacggcacctaccgc
tgcttcgctgccaactcagtgggcgagtcgtatgacgactacatcctctatgtctatgat
gcccccaccactacccctatacccactacagctactaccaccactcccaccaccacaacc
atctccctccctgaagccactgcagacactacgcccagcactgaacccgcagcacacgat
tccagagctggagagggagcaccgagagcggtcgaccatgcagtcattggaggagtggtg
gctgtggttgtctttgccatgctctgtctactcatcattttgggacggtactttgcaaga
cacaaaggtacctacttcacgcatgaagctaaaggagccgacgatgcagcagatgcagac
acagccattatcaacgcagaggggggccacaacaactcggacgagaagaaggagtactac
atatag
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