Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423227
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Entry
139423227 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139423227
04148 Efferocytosis
139423227
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139423227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139423227
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139423227
Hops complex
139423227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
zf-ANAPC11
TPR_GEMI5
Beta-prop_EML_2
zf-RING_5
WD40_CDC20-Fz
ToxA_N
zf-RING-like
Kbp-5
DLP_helical
DivIC
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
139423227
NCBI-ProteinID:
XP_071031097
LinkDB
All DBs
Position
12:44929954..44950547
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AA seq
958 aa
AA seq
DB search
MFREDSADPVGWCFQDYWGLGNKQDSAKKMAAFLQWRRFVFFDKETVKDAGDNGKNFVLP
VGISACDSGRGHIVLGDMDGQIWFLTRSLQLSSFQAYKLRVTHLYQLKQHSILVTVGQDE
QGINPLVKVWNPDKRDSGNPLCTRIFPAIPGNKPTEVSCLSVHENLNFMAIGFTDGSVVL
TKGDITRDRHSKTLTLHEGTCPITGLAFRQQSKVTHLFVATLEKVHCYTLSVKEYPKLEL
DTHGCALRCSALTDPSQDSQFIVAGDECVYLYQPDERGPCFAFDGHKLLAHWHRGYLLLL
TRDTKSPNKSEFGSRETSPSEKQILTIYDLDNKFIAYSASFDDIIDVLAEWGSFYILTRD
GKMFVLQEKDTQTKLEMLFKKNLFVMAINLAKSQHLDSDGLSEIFRQYGDHLYVKGDHDG
AIQQYIRTIRKLEPSYVIRKFLDAQRIHNLTAYLQALHRQSLANADHTTLLLNCYTKLKD
SSKLEEFIKSSESEVHFDVEIAIKVLRQAGYHSHAVFLAERHQHHKWYLKIQLEDLKNYQ
EALRYIGRLPFDQAESNMKRYGKTLMHHVPDGTTLLLKGLCTDYQPSRDAMERESLDRGP
AVAKKANSEEFISVFANNPRELRAFLEHMIEVEPFSSQGVYDTLLELRLQDWAHEQDSER
KKVLQGAALSLLRSDNTVFDKALVLCQMHNFKEGVLYLYEKGKLYQQIMHYHMQNEEYGK
VVEACKRYGDQEVCLWEQALGYFARKEEDCKAYISQVLEHIDQNNLMPPLLVVQTLAHNS
TATLSVIKDYLINKLQRESQQIEDDERKIRQYREETAHLRAEIQELRSSAKIFQKTKCSM
CNSPLELPSVHFLCSHSFHQHCFESYAESEAECPTCTPENRKVMDMLRAQDQKRDLHDHF
TRQLRCSNDGFSVVADYFGRGVFNKLTLVTDPPGSKVGVGSLEADLQRDLLIHTKRNT
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgttccgcgaggacagcgctgaccctgttggttggtgctttcaagactattggggactc
ggaaataaacaagacagtgcaaagaaaatggctgcgttcttacagtggagacgatttgtg
ttttttgataaagagaccgtgaaggacgctggagataatgggaagaactttgtcctcccg
gttggcatatctgcgtgtgactcgggccggggccacatcgttcttggagatatggacggt
cagatctggtttttgacacgctccctacagttgtcctcctttcaggcttacaagctgaga
gtgacccacctgtaccagctcaaacaacacagcattttggtcacggttgggcaggatgag
caaggaattaaccccctggtgaaggtatggaatccggacaagcgtgacagcgggaatcct
ctgtgtaccagaatattcccagcaattcctgggaacaaaccaacagaggtgtcctgcctc
agtgtacacgagaacctaaactttatggctattggcttcacagatggcagtgtggtgttg
acaaagggtgacataacccgggacaggcacagtaaaaccctgacactgcatgagggcacc
tgtccaatcacgggcctcgctttccgtcagcagagcaaagtcactcacttatttgttgcc
actctggaaaaagtccattgctacactttgtcggtgaaggagtaccctaaactggaactg
gacacccacggctgtgcgctgcgttgctctgcactcacagacccctcccaggactcccag
tttattgtcgcgggagatgagtgtgtgtacctttaccagcctgatgaacgggggccctgt
ttcgctttcgatgggcacaagctactggcccactggcaccggggctacctcctgctgctc
accagggacaccaagtctcccaacaagtctgaatttgggagtagagagacatctccttcg
gagaaacaaatcttgacaatctacgacctggacaacaagttcattgcctacagcgcttcc
tttgatgacatcattgatgttctggctgaatggggctccttctacatcctgactcgggat
ggaaaaatgtttgtgctgcaggagaaagacactcagaccaagctagagatgctcttcaag
aagaatctgtttgtgatggccatcaacctggctaagagccagcacttggacagtgacggg
ctgtctgagattttcaggcagtacggtgaccacctctacgtgaagggggaccacgatgga
gccatccaacagtacatccgcacaatcaggaagctggagccttcttacgtaatccggaag
tttctggatgctcagaggatccacaacctgacggcctacctccaggccctgcaccggcag
tcgctggccaatgccgaccacaccaccctgctgctcaactgctacaccaagctgaaggac
agctctaagcttgaagagttcatcaagagcagcgagagcgaggtccacttcgacgtggag
attgcaatcaaggtgctgcgccaggcaggctaccacagtcacgcagtcttcctggccgag
aggcaccagcaccacaagtggtacctgaagatccagcttgaggacctgaagaactaccag
gaggctttgcgttacattggacgacttcctttcgaccaggcagagagcaacatgaaacgc
tacggcaagaccctgatgcaccacgtccccgacggcaccacactgcttctcaagggcctg
tgtactgactaccagcccagccgggatgccatggaaagagagagcctggacagaggcccg
gcggtggccaagaaggcaaattcagaggagttcatctctgtgtttgctaataacccgcgg
gagctaagggccttcctggagcacatgattgaggtggagcccttctcctctcagggggtg
tatgacacactgctagaactacggctgcaggactgggcacatgaacaagactctgagagg
aagaaggtcctgcagggggcagcactgtccttgctgaggagcgacaacaccgtatttgac
aaggccctcgtcctgtgccagatgcacaacttcaaagaaggggtcctctacctctatgag
aagggcaaactgtaccagcagatcatgcactaccacatgcagaatgaggagtatggcaaa
gtggtggaggcctgcaagcgctacggcgaccaggaagtatgcttgtgggagcaggcgctg
ggatactttgcccgcaaagaggaggactgcaaggcctacatcagccaagtcctggagcac
atcgaccagaacaacctgatgcctcccctattggtggtgcagacgctggcacacaactcc
acagccacgctgtcggtcatcaaggactacctgatcaacaagctgcagagggagagccag
cagattgaggacgatgagcgcaagatccgccagtaccgcgaggagacggcccacctccgc
gccgagatccaggaactcagaagcagcgcaaagattttccagaagaccaagtgcagcatg
tgcaacagccccctcgagctgccctctgttcacttcctgtgcagtcactccttccaccag
cactgctttgagagctacgccgagagtgaggccgagtgtcccacatgcacaccggaaaac
cggaaggtcatggacatgctgcgggcccaggaccagaaacgagacctgcacgaccacttc
accagacagctgcggtgctccaatgatggtttctccgtggtggcggactactttggccgt
ggggtgttcaacaagctgaccctggtcactgacccgccggggagcaaggtgggggtggga
agcctggaggcagacctgcagagggacctactcatccacaccaagaggaacacttga
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